Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC107083.1-201ENST00000439643 279 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 IFNWP4-201ENST00000453148 294 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 MIR2114-201ENST00000516645 80 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 RNU6-111P-201ENST00000517179 105 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 AC091144.1-201ENST00000519573 138 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.37□□□□□ -1.87
COL4A3Q01955 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.37□□□□□ -1.87
COL4A3Q01955 AC098479.1-201ENST00000609225 154 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.37□□□□□ -1.87
COL4A3Q01955 AL353748.2-201ENST00000622148 471 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
COL4A3Q01955 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.37□□□□□ -1.87
COL4A3Q01955 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A3Q01955 MTND5P9-201ENST00000503854 1755 ntBASIC3.37□□□□□ -1.87
COL4A3Q01955 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A3Q01955 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
COL4A3Q01955 DEFB108F-201ENST00000344638 222 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 Y_RNA.20-201ENST00000362479 113 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 RNU6-384P-201ENST00000364900 104 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 Z98941.1-201ENST00000407764 100 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 RPL21P38-201ENST00000418090 167 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 AC092573.2-201ENST00000434546 243 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 AC098869.1-201ENST00000481627 292 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A3Q01955 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.36□□□□□ -1.87
COL4A3Q01955 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A3Q01955 AC022080.3-201ENST00000544433 482 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 FAM60BP-201ENST00000578364 658 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 MIR4458-201ENST00000578872 75 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 MIR5701-3-201ENST00000578890 82 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 MIR4738-201ENST00000579134 87 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 MIR3162-201ENST00000581818 82 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 MIR5701-1-201ENST00000585138 82 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 MIR5701-2-201ENST00000615634 82 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.36□□□□□ -1.87
COL4A3Q01955 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
COL4A3Q01955 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
COL4A3Q01955 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.36□□□□□ -1.87
COL4A3Q01955 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
COL4A3Q01955 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 SDAD1P2-201ENST00000441308 2028 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 AC073325.2-201ENST00000339545 159 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 U3.13-201ENST00000364804 214 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 RNU6-827P-201ENST00000365553 106 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 Y_RNA.458-201ENST00000384240 102 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 AL079342.1-201ENST00000401460 267 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A3Q01955 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 TOMM20P4-201ENST00000427861 435 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 AL139132.1-201ENST00000431587 344 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A3Q01955 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 RPL7P5-201ENST00000471472 736 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A3Q01955 AC091826.1-201ENST00000514065 313 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 AC109329.1-201ENST00000518744 317 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 MIR2682-201ENST00000580305 110 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 UBL5P2-201ENST00000583788 219 ntBASIC3.36□□□□□ -1.87
COL4A3Q01955 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A3Q01955 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
COL4A3Q01955 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A3Q01955 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A3Q01955 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
COL4A3Q01955 OR4G2P-202ENST00000641004 1759 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.35□□□□□ -1.87
COL4A3Q01955 AL391987.6-201ENST00000305671 199 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 MIR335-201ENST00000362173 94 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 RNU1-76P-201ENST00000362903 159 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 Y_RNA.416-201ENST00000384014 113 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 RNU6-629P-201ENST00000384061 103 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 RNU6-708P-201ENST00000384217 107 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 Y_RNA.592-201ENST00000410274 109 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 RNU6-121P-201ENST00000410525 99 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 RNU2-25P-201ENST00000411041 191 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 RAC1P3-201ENST00000416129 580 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 NDUFB1P2-201ENST00000449477 176 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.35□□□□□ -1.87
COL4A3Q01955 RNU6-138P-201ENST00000515952 107 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 AC034114.1-201ENST00000520293 285 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 AC025755.1-201ENST00000521306 278 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 AL590705.4-201ENST00000532209 134 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.35□□□□□ -1.87
COL4A3Q01955 AC073410.2-201ENST00000603240 332 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 AL161798.1-201ENST00000604630 131 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 AL137790.1-201ENST00000634283 177 ntBASIC3.35□□□□□ -1.87
COL4A3Q01955 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A3Q01955 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A3Q01955 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A3Q01955 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A3Q01955 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A3Q01955 AL049555.1-201ENST00000562834 1933 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms