Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.16□□□□□ -1.74
LIG3P49916 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
LIG3P49916 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.15□□□□□ -1.74
LIG3P49916 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
LIG3P49916 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
LIG3P49916 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
LIG3P49916 MIR335-201ENST00000362173 94 ntBASIC4.15□□□□□ -1.75
LIG3P49916 SNORD81.1-201ENST00000363064 77 ntBASIC4.15□□□□□ -1.75
LIG3P49916 Y_RNA.143-201ENST00000363520 106 ntBASIC4.15□□□□□ -1.75
LIG3P49916 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
LIG3P49916 Y_RNA.504-201ENST00000384481 104 ntBASIC4.15□□□□□ -1.75
LIG3P49916 SNORA1.3-201ENST00000384676 136 ntBASIC4.15□□□□□ -1.75
LIG3P49916 MIR544A-201ENST00000384855 91 ntBASIC4.15□□□□□ -1.75
LIG3P49916 HSPE1P26-201ENST00000405341 275 ntBASIC4.15□□□□□ -1.75
LIG3P49916 MTHFD2P2-201ENST00000407725 247 ntBASIC4.15□□□□□ -1.75
LIG3P49916 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.15□□□□□ -1.75
LIG3P49916 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.15□□□□□ -1.75
LIG3P49916 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.15□□□□□ -1.75
LIG3P49916 AC004383.1-201ENST00000438135 289 ntBASIC4.15□□□□□ -1.75
LIG3P49916 SNRPGP7-201ENST00000469016 106 ntBASIC4.15□□□□□ -1.75
LIG3P49916 RN7SL604P-201ENST00000492589 296 ntBASIC4.15□□□□□ -1.75
LIG3P49916 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.15□□□□□ -1.75
LIG3P49916 MIR4659A-201ENST00000580269 81 ntBASIC4.15□□□□□ -1.75
LIG3P49916 MIR3609-201ENST00000582661 80 ntBASIC4.15□□□□□ -1.75
LIG3P49916 Clostridiales-1.2-201ENST00000636724 160 ntBASIC4.15□□□□□ -1.75
LIG3P49916 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.15□□□□□ -1.75
LIG3P49916 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.15□□□□□ -1.75
LIG3P49916 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIG3P49916 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LIG3P49916 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIG3P49916 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.14□□□□□ -1.75
LIG3P49916 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.14□□□□□ -1.75
LIG3P49916 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.14□□□□□ -1.75
LIG3P49916 AL391987.6-201ENST00000305671 199 ntBASIC4.14□□□□□ -1.75
LIG3P49916 snoU2_19.2-201ENST00000363024 80 ntBASIC4.14□□□□□ -1.75
LIG3P49916 RNU6-1141P-201ENST00000364520 107 ntBASIC4.14□□□□□ -1.75
LIG3P49916 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.14□□□□□ -1.75
LIG3P49916 Y_RNA.416-201ENST00000384014 113 ntBASIC4.14□□□□□ -1.75
LIG3P49916 RNU6-541P-201ENST00000384709 110 ntBASIC4.14□□□□□ -1.75
LIG3P49916 MIR215-201ENST00000384858 110 ntBASIC4.14□□□□□ -1.75
LIG3P49916 RNU1-139P-201ENST00000391307 165 ntBASIC4.14□□□□□ -1.75
LIG3P49916 AL079342.1-201ENST00000401460 267 ntBASIC4.14□□□□□ -1.75
LIG3P49916 MRPL35P1-201ENST00000404272 572 ntBASIC4.14□□□□□ -1.75
LIG3P49916 AL591034.1-201ENST00000407447 340 ntBASIC4.14□□□□□ -1.75
LIG3P49916 BPY2DP-201ENST00000422208 265 ntBASIC4.14□□□□□ -1.75
LIG3P49916 RPS15AP7-201ENST00000439294 405 ntBASIC4.14□□□□□ -1.75
LIG3P49916 AC006011.1-201ENST00000442758 349 ntBASIC4.14□□□□□ -1.75
LIG3P49916 GPM6BP3-201ENST00000442797 145 ntBASIC4.14□□□□□ -1.75
LIG3P49916 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.14□□□□□ -1.75
LIG3P49916 AP000870.1-201ENST00000472927 406 ntBASIC4.14□□□□□ -1.75
LIG3P49916 AC016632.1-201ENST00000503994 196 ntBASIC4.14□□□□□ -1.75
LIG3P49916 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.14□□□□□ -1.75
LIG3P49916 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC4.14□□□□□ -1.75
LIG3P49916 RNU6-1114P-201ENST00000516022 107 ntBASIC4.14□□□□□ -1.75
LIG3P49916 RNU6-581P-201ENST00000516214 105 ntBASIC4.14□□□□□ -1.75
LIG3P49916 HSPE1P4-201ENST00000550617 308 ntBASIC4.14□□□□□ -1.75
LIG3P49916 AC021739.1-201ENST00000559631 174 ntBASIC4.14□□□□□ -1.75
LIG3P49916 SNORA43.4-201ENST00000629559 138 ntBASIC4.14□□□□□ -1.75
LIG3P49916 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
LIG3P49916 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
LIG3P49916 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIG3P49916 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
LIG3P49916 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
LIG3P49916 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LIG3P49916 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.13□□□□□ -1.75
LIG3P49916 MIR372-201ENST00000362225 67 ntBASIC4.13□□□□□ -1.75
LIG3P49916 Y_RNA.20-201ENST00000362479 113 ntBASIC4.13□□□□□ -1.75
LIG3P49916 RNU6-879P-201ENST00000364328 108 ntBASIC4.13□□□□□ -1.75
LIG3P49916 Y_RNA.237-201ENST00000364439 102 ntBASIC4.13□□□□□ -1.75
LIG3P49916 RNU2-37P-201ENST00000410695 177 ntBASIC4.13□□□□□ -1.75
LIG3P49916 EIF1P2-201ENST00000428233 350 ntBASIC4.13□□□□□ -1.75
LIG3P49916 AC016700.2-201ENST00000446011 156 ntBASIC4.13□□□□□ -1.75
LIG3P49916 AL590664.1-201ENST00000448065 339 ntBASIC4.13□□□□□ -1.75
LIG3P49916 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.13□□□□□ -1.75
LIG3P49916 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.13□□□□□ -1.75
LIG3P49916 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.13□□□□□ -1.75
LIG3P49916 SNORA31.23-201ENST00000517219 133 ntBASIC4.13□□□□□ -1.75
LIG3P49916 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.13□□□□□ -1.75
LIG3P49916 GNRHR2P1-201ENST00000555315 631 ntBASIC4.13□□□□□ -1.75
LIG3P49916 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.13□□□□□ -1.75
LIG3P49916 HAUS6P2-201ENST00000433254 2404 ntBASIC4.13□□□□□ -1.75
LIG3P49916 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.13□□□□□ -1.75
LIG3P49916 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LIG3P49916 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.12□□□□□ -1.75
LIG3P49916 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
LIG3P49916 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIG3P49916 RNU5B-2P-201ENST00000363036 113 ntBASIC4.12□□□□□ -1.75
LIG3P49916 SNORD27-201ENST00000363981 72 ntBASIC4.12□□□□□ -1.75
LIG3P49916 RNU2-64P-201ENST00000411315 191 ntBASIC4.12□□□□□ -1.75
LIG3P49916 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC4.12□□□□□ -1.75
LIG3P49916 AL117339.2-201ENST00000430475 180 ntBASIC4.12□□□□□ -1.75
LIG3P49916 RNU7-170P-201ENST00000459303 61 ntBASIC4.12□□□□□ -1.75
LIG3P49916 RPS23P5-201ENST00000495419 428 ntBASIC4.12□□□□□ -1.75
LIG3P49916 HMGB3P17-201ENST00000504195 649 ntBASIC4.12□□□□□ -1.75
LIG3P49916 AC020593.1-201ENST00000507399 299 ntBASIC4.12□□□□□ -1.75
LIG3P49916 RNU5F-8P-201ENST00000515941 111 ntBASIC4.12□□□□□ -1.75
LIG3P49916 CKS1BP7-201ENST00000522230 235 ntBASIC4.12□□□□□ -1.75
LIG3P49916 DEFB108E-201ENST00000524692 240 ntBASIC4.12□□□□□ -1.75
LIG3P49916 AC023824.2-201ENST00000566185 400 ntBASIC4.12□□□□□ -1.75
LIG3P49916 MIR5571-201ENST00000577998 113 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 143.8 ms