Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CTCFP49711 RNY4P14-201ENST00000363656 96 ntBASIC3.01□□□□□ -1.93
CTCFP49711 RNU4-12P-201ENST00000365233 139 ntBASIC3.01□□□□□ -1.93
CTCFP49711 RNU4-20P-201ENST00000365601 151 ntBASIC3.01□□□□□ -1.93
CTCFP49711 RNU6-898P-201ENST00000365627 104 ntBASIC3.01□□□□□ -1.93
CTCFP49711 Y_RNA.402-201ENST00000383972 102 ntBASIC3.01□□□□□ -1.93
CTCFP49711 RNU6-393P-201ENST00000384475 107 ntBASIC3.01□□□□□ -1.93
CTCFP49711 RNU6-750P-201ENST00000390946 107 ntBASIC3.01□□□□□ -1.93
CTCFP49711 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CTCFP49711 AL606923.1-201ENST00000406616 190 ntBASIC3.01□□□□□ -1.93
CTCFP49711 CYCSP33-201ENST00000414485 327 ntBASIC3.01□□□□□ -1.93
CTCFP49711 MTCO1P20-201ENST00000425366 358 ntBASIC3.01□□□□□ -1.93
CTCFP49711 UBE2V1P8-201ENST00000437166 265 ntBASIC3.01□□□□□ -1.93
CTCFP49711 RPS29P6-201ENST00000438196 145 ntBASIC3.01□□□□□ -1.93
CTCFP49711 SEPT14P3-201ENST00000439401 183 ntBASIC3.01□□□□□ -1.93
CTCFP49711 AL732372.2-207ENST00000445840 183 ntBASIC3.01□□□□□ -1.93
CTCFP49711 SEPT14P2-201ENST00000453405 183 ntBASIC3.01□□□□□ -1.93
CTCFP49711 AC008571.1-201ENST00000467232 300 ntBASIC3.01□□□□□ -1.93
CTCFP49711 AL121769.1-201ENST00000469473 401 ntBASIC3.01□□□□□ -1.93
CTCFP49711 HMGB1P30-201ENST00000492455 606 ntBASIC3.01□□□□□ -1.93
CTCFP49711 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.01□□□□□ -1.93
CTCFP49711 SEPT14P4-201ENST00000513445 186 ntBASIC3.01□□□□□ -1.93
CTCFP49711 RN7SKP24-201ENST00000515888 284 ntBASIC3.01□□□□□ -1.93
CTCFP49711 FO082796.1-201ENST00000523795 183 ntBASIC3.01□□□□□ -1.93
CTCFP49711 AC109635.3-201ENST00000529536 185 ntBASIC3.01□□□□□ -1.93
CTCFP49711 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.01□□□□□ -1.93
CTCFP49711 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.01□□□□□ -1.93
CTCFP49711 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.01□□□□□ -1.93
CTCFP49711 BNIP3P6-201ENST00000549284 499 ntBASIC3.01□□□□□ -1.93
CTCFP49711 AC103810.1-201ENST00000579873 453 ntBASIC3.01□□□□□ -1.93
CTCFP49711 AP003465.2-201ENST00000602571 373 ntBASIC3.01□□□□□ -1.93
CTCFP49711 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC3.01□□□□□ -1.93
CTCFP49711 uc_338.34-201ENST00000617467 174 ntBASIC3.01□□□□□ -1.93
CTCFP49711 AC022418.1-201ENST00000624118 445 ntBASIC3.01□□□□□ -1.93
CTCFP49711 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.01□□□□□ -1.93
CTCFP49711 FER-210ENST00000628534 558 ntTSL 5 BASIC3.01□□□□□ -1.93
CTCFP49711 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.01□□□□□ -1.93
CTCFP49711 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CTCFP49711 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
CTCFP49711 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.01□□□□□ -1.93
CTCFP49711 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
CTCFP49711 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3□□□□□ -1.93
CTCFP49711 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3□□□□□ -1.93
CTCFP49711 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
CTCFP49711 Y_RNA.38-201ENST00000362617 102 ntBASIC3□□□□□ -1.93
CTCFP49711 RNU1-35P-201ENST00000362782 153 ntBASIC3□□□□□ -1.93
CTCFP49711 RNU6-1303P-201ENST00000364841 107 ntBASIC3□□□□□ -1.93
CTCFP49711 RNU6-434P-201ENST00000384376 107 ntBASIC3□□□□□ -1.93
CTCFP49711 MIR10A-201ENST00000385043 110 ntBASIC3□□□□□ -1.93
CTCFP49711 BTF3P7-201ENST00000407097 488 ntBASIC3□□□□□ -1.93
CTCFP49711 RNU6-1068P-201ENST00000410958 103 ntBASIC3□□□□□ -1.93
CTCFP49711 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3□□□□□ -1.93
CTCFP49711 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3□□□□□ -1.93
CTCFP49711 AC016831.2-201ENST00000417179 352 ntBASIC3□□□□□ -1.93
CTCFP49711 USP9YP27-201ENST00000418455 438 ntBASIC3□□□□□ -1.93
CTCFP49711 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3□□□□□ -1.93
CTCFP49711 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3□□□□□ -1.93
CTCFP49711 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3□□□□□ -1.93
CTCFP49711 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3□□□□□ -1.93
CTCFP49711 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3□□□□□ -1.93
CTCFP49711 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3□□□□□ -1.93
CTCFP49711 AC107222.1-201ENST00000510899 637 ntBASIC3□□□□□ -1.93
CTCFP49711 VTRNA2-2P-201ENST00000516091 103 ntBASIC3□□□□□ -1.93
CTCFP49711 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3□□□□□ -1.93
CTCFP49711 MIR892C-201ENST00000516410 77 ntBASIC3□□□□□ -1.93
CTCFP49711 RNU6-826P-201ENST00000516827 104 ntBASIC3□□□□□ -1.93
CTCFP49711 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3□□□□□ -1.93
CTCFP49711 GLYCAM1-201ENST00000546596 285 ntBASIC3□□□□□ -1.93
CTCFP49711 AC092325.1-201ENST00000566449 554 ntBASIC3□□□□□ -1.93
CTCFP49711 ZNF861P-201ENST00000588126 639 ntBASIC3□□□□□ -1.93
CTCFP49711 AC005261.5-201ENST00000596280 355 ntBASIC3□□□□□ -1.93
CTCFP49711 MIR8070-201ENST00000616510 88 ntBASIC3□□□□□ -1.93
CTCFP49711 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3□□□□□ -1.93
CTCFP49711 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
CTCFP49711 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CTCFP49711 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3□□□□□ -1.93
CTCFP49711 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3□□□□□ -1.93
CTCFP49711 AC010889.1-201ENST00000566193 2666 ntBASIC2.99□□□□□ -1.93
CTCFP49711 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CTCFP49711 RPL9P7-201ENST00000330965 580 ntBASIC2.99□□□□□ -1.93
CTCFP49711 RNU6-451P-201ENST00000362921 107 ntBASIC2.99□□□□□ -1.93
CTCFP49711 RNU1-91P-201ENST00000364746 163 ntBASIC2.99□□□□□ -1.93
CTCFP49711 SNORA25.9-201ENST00000365087 128 ntBASIC2.99□□□□□ -1.93
CTCFP49711 Y_RNA.399-201ENST00000383955 105 ntBASIC2.99□□□□□ -1.93
CTCFP49711 RNU6-38P-201ENST00000384085 107 ntBASIC2.99□□□□□ -1.93
CTCFP49711 MIR518C-201ENST00000384822 101 ntBASIC2.99□□□□□ -1.93
CTCFP49711 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.99□□□□□ -1.93
CTCFP49711 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.99□□□□□ -1.93
CTCFP49711 AC092001.1-201ENST00000453012 261 ntBASIC2.99□□□□□ -1.93
CTCFP49711 RNU6-333P-201ENST00000459117 107 ntBASIC2.99□□□□□ -1.93
CTCFP49711 MTAPP1-201ENST00000489154 819 ntBASIC2.99□□□□□ -1.93
CTCFP49711 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.99□□□□□ -1.93
CTCFP49711 AC074344.1-201ENST00000512823 224 ntBASIC2.99□□□□□ -1.93
CTCFP49711 MTND4P7-201ENST00000523876 130 ntBASIC2.99□□□□□ -1.93
CTCFP49711 AL121821.2-201ENST00000556081 394 ntBASIC2.99□□□□□ -1.93
CTCFP49711 AC087045.1-201ENST00000605856 382 ntBASIC2.99□□□□□ -1.93
CTCFP49711 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.99□□□□□ -1.93
CTCFP49711 MIR3688-2-201ENST00000636963 87 ntBASIC2.99□□□□□ -1.93
CTCFP49711 AC010329.5-201ENST00000623497 2174 ntBASIC2.99□□□□□ -1.93
CTCFP49711 AL355596.1-201ENST00000565399 3996 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms