Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CXCL12P48061 CYCSP48-201ENST00000417124 323 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.66□□□□□ -2.14
CXCL12P48061 AC009518.2-201ENST00000418056 731 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.66□□□□□ -2.14
CXCL12P48061 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.66□□□□□ -2.14
CXCL12P48061 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.66□□□□□ -2.14
CXCL12P48061 RPS6P15-201ENST00000431996 751 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 AC009961.2-201ENST00000435771 251 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.66□□□□□ -2.14
CXCL12P48061 GAPDHP17-201ENST00000449858 1001 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CXCL12P48061 AC003071.1-201ENST00000451219 789 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CXCL12P48061 MTCYBP1-201ENST00000454315 1119 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.66□□□□□ -2.14
CXCL12P48061 snoU109.2-201ENST00000459316 135 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 RPL36AP48-201ENST00000485521 314 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.66□□□□□ -2.14
CXCL12P48061 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.66□□□□□ -2.14
CXCL12P48061 Vault.3-201ENST00000516676 95 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC1.66□□□□□ -2.14
CXCL12P48061 AC008521.1-201ENST00000587471 187 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 AL645939.4-201ENST00000604495 135 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 AC090578.1-201ENST00000604955 591 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 AL162373.1-201ENST00000620433 407 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 AC138627.2-201ENST00000624202 601 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.66□□□□□ -2.14
CXCL12P48061 AC019226.2-201ENST00000625973 424 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 AL157786.1-207ENST00000627771 695 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
CXCL12P48061 Z75746.1-201ENST00000440243 2080 ntBASIC1.66□□□□□ -2.14
CXCL12P48061 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.65□□□□□ -2.14
CXCL12P48061 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.65□□□□□ -2.14
CXCL12P48061 MTND4P1-201ENST00000457501 1466 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 RNU6-486P-201ENST00000363116 107 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CXCL12P48061 MIR578-201ENST00000384828 96 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 SNORA67.6-201ENST00000391093 99 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
CXCL12P48061 Y_RNA.623-201ENST00000411128 95 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC097463.2-201ENST00000421074 142 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AL365338.1-201ENST00000422282 858 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC092447.3-201ENST00000426027 686 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 CALM2P2-201ENST00000428512 440 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.65□□□□□ -2.15
CXCL12P48061 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.65□□□□□ -2.15
CXCL12P48061 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC1.65□□□□□ -2.15
CXCL12P48061 AC073614.1-201ENST00000438690 650 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.65□□□□□ -2.15
CXCL12P48061 RGS5-217ENST00000451759 835 ntTSL 3 BASIC1.65□□□□□ -2.15
CXCL12P48061 AL033528.1-201ENST00000453780 140 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC080013.2-201ENST00000460866 323 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC112771.1-201ENST00000463581 102 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC068781.1-201ENST00000488231 618 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.65□□□□□ -2.15
CXCL12P48061 RNA5SP112-201ENST00000515937 99 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC090572.1-201ENST00000519251 160 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.65□□□□□ -2.15
CXCL12P48061 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.65□□□□□ -2.15
CXCL12P48061 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.65□□□□□ -2.15
CXCL12P48061 CBX3P7-201ENST00000532876 502 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 CBX3P4-201ENST00000538909 354 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 MIR3618-201ENST00000580330 88 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 MIR548AC-201ENST00000585049 88 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC008749.1-201ENST00000597650 306 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 CLIC4P2-201ENST00000601934 717 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC068276.1-201ENST00000605793 379 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC087045.1-201ENST00000605856 382 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AL161423.1-201ENST00000613700 262 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 AC024581.2-201ENST00000619986 252 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 uc_338.20-201ENST00000621563 178 ntBASIC1.65□□□□□ -2.15
CXCL12P48061 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.65□□□□□ -2.15
CXCL12P48061 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
CXCL12P48061 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.64□□□□□ -2.15
CXCL12P48061 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CXCL12P48061 U3.4-201ENST00000363352 213 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 SNORA7.1-201ENST00000363750 139 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 RNY3P10-201ENST00000384764 102 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.64□□□□□ -2.15
CXCL12P48061 U6atac.2-201ENST00000408644 118 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 RNA5SP111-201ENST00000411386 101 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 AL030996.1-201ENST00000411430 235 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.64□□□□□ -2.15
CXCL12P48061 AL513185.2-201ENST00000425543 193 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.64□□□□□ -2.15
CXCL12P48061 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.64□□□□□ -2.15
CXCL12P48061 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.64□□□□□ -2.15
CXCL12P48061 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.64□□□□□ -2.15
CXCL12P48061 AL441985.1-201ENST00000457727 251 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 TOMM22P6-201ENST00000465035 409 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 KLF3P2-201ENST00000465138 268 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.64□□□□□ -2.15
CXCL12P48061 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.64□□□□□ -2.15
CXCL12P48061 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.64□□□□□ -2.15
CXCL12P48061 AP005902.1-201ENST00000521358 186 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 AC087883.1-201ENST00000551882 391 ntBASIC1.64□□□□□ -2.15
CXCL12P48061 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.64□□□□□ -2.15
CXCL12P48061 MTND3P12-201ENST00000559068 328 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms