Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 Y_RNA.464-201ENST00000384282 110 ntBASIC4.41□□□□□ -1.7
LIG1P18858 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.41□□□□□ -1.7
LIG1P18858 RNU7-87P-201ENST00000459343 62 ntBASIC4.41□□□□□ -1.7
LIG1P18858 AC010265.1-201ENST00000513509 211 ntBASIC4.41□□□□□ -1.7
LIG1P18858 RNU6-1012P-201ENST00000516606 109 ntBASIC4.41□□□□□ -1.7
LIG1P18858 RNA5SP179-201ENST00000517284 121 ntBASIC4.41□□□□□ -1.7
LIG1P18858 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.41□□□□□ -1.7
LIG1P18858 CASP1P1-201ENST00000526345 212 ntBASIC4.41□□□□□ -1.7
LIG1P18858 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIG1P18858 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.41□□□□□ -1.7
LIG1P18858 MIR4474-201ENST00000579189 78 ntBASIC4.41□□□□□ -1.7
LIG1P18858 MIR4286-201ENST00000580651 93 ntBASIC4.41□□□□□ -1.7
LIG1P18858 AC060766.3-201ENST00000591442 263 ntBASIC4.41□□□□□ -1.7
LIG1P18858 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIG1P18858 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIG1P18858 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.41□□□□□ -1.7
LIG1P18858 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.41□□□□□ -1.7
LIG1P18858 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.4□□□□□ -1.7
LIG1P18858 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
LIG1P18858 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
LIG1P18858 Y_RNA.16-201ENST00000362421 102 ntBASIC4.4□□□□□ -1.71
LIG1P18858 Y_RNA.123-201ENST00000363338 102 ntBASIC4.4□□□□□ -1.71
LIG1P18858 Y_RNA.541-201ENST00000384640 113 ntBASIC4.4□□□□□ -1.71
LIG1P18858 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.4□□□□□ -1.71
LIG1P18858 AL591043.1-201ENST00000432461 424 ntBASIC4.4□□□□□ -1.71
LIG1P18858 AL445305.1-201ENST00000432577 575 ntBASIC4.4□□□□□ -1.71
LIG1P18858 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.4□□□□□ -1.71
LIG1P18858 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.4□□□□□ -1.71
LIG1P18858 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.4□□□□□ -1.71
LIG1P18858 AC092798.1-201ENST00000458542 409 ntBASIC4.4□□□□□ -1.71
LIG1P18858 RNU6-1231P-201ENST00000517185 103 ntBASIC4.4□□□□□ -1.71
LIG1P18858 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.4□□□□□ -1.71
LIG1P18858 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.4□□□□□ -1.71
LIG1P18858 AC053481.4-201ENST00000583164 216 ntBASIC4.4□□□□□ -1.71
LIG1P18858 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.4□□□□□ -1.71
LIG1P18858 AC090132.2-201ENST00000615881 347 ntBASIC4.4□□□□□ -1.71
LIG1P18858 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC4.4□□□□□ -1.71
LIG1P18858 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.4□□□□□ -1.71
LIG1P18858 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.39□□□□□ -1.71
LIG1P18858 RNU6-336P-201ENST00000364891 107 ntBASIC4.39□□□□□ -1.71
LIG1P18858 RNU5E-7P-201ENST00000365290 117 ntBASIC4.39□□□□□ -1.71
LIG1P18858 RNU6-662P-201ENST00000384253 104 ntBASIC4.39□□□□□ -1.71
LIG1P18858 PCNPP3-201ENST00000393579 471 ntBASIC4.39□□□□□ -1.71
LIG1P18858 AL591034.1-201ENST00000407447 340 ntBASIC4.39□□□□□ -1.71
LIG1P18858 MIR1298-201ENST00000408783 112 ntBASIC4.39□□□□□ -1.71
LIG1P18858 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.39□□□□□ -1.71
LIG1P18858 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.39□□□□□ -1.71
LIG1P18858 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC4.39□□□□□ -1.71
LIG1P18858 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.39□□□□□ -1.71
LIG1P18858 AL078601.1-201ENST00000444542 271 ntBASIC4.39□□□□□ -1.71
LIG1P18858 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.39□□□□□ -1.71
LIG1P18858 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.39□□□□□ -1.71
LIG1P18858 AC139453.3-201ENST00000493276 369 ntBASIC4.39□□□□□ -1.71
LIG1P18858 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.39□□□□□ -1.71
LIG1P18858 RNU6-572P-201ENST00000516724 80 ntBASIC4.39□□□□□ -1.71
LIG1P18858 AC090617.3-201ENST00000573670 475 ntBASIC4.39□□□□□ -1.71
LIG1P18858 AC240442.1-201ENST00000616055 283 ntBASIC4.39□□□□□ -1.71
LIG1P18858 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LIG1P18858 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIG1P18858 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIG1P18858 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.39□□□□□ -1.71
LIG1P18858 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
LIG1P18858 AC007785.2-201ENST00000598627 1916 ntBASIC4.38□□□□□ -1.71
LIG1P18858 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.38□□□□□ -1.71
LIG1P18858 RNU6-741P-201ENST00000383889 107 ntBASIC4.38□□□□□ -1.71
LIG1P18858 SNORA19-201ENST00000384737 128 ntBASIC4.38□□□□□ -1.71
LIG1P18858 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
LIG1P18858 AL079342.1-201ENST00000401460 267 ntBASIC4.38□□□□□ -1.71
LIG1P18858 AC007560.1-201ENST00000426912 237 ntBASIC4.38□□□□□ -1.71
LIG1P18858 RPL21P40-201ENST00000428586 483 ntBASIC4.38□□□□□ -1.71
LIG1P18858 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.38□□□□□ -1.71
LIG1P18858 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.38□□□□□ -1.71
LIG1P18858 PIGFP3-201ENST00000441918 722 ntBASIC4.38□□□□□ -1.71
LIG1P18858 U8.22-201ENST00000459141 133 ntBASIC4.38□□□□□ -1.71
LIG1P18858 RAC1P2-201ENST00000511164 579 ntBASIC4.38□□□□□ -1.71
LIG1P18858 IGHVII-53-1-201ENST00000519538 255 ntBASIC4.38□□□□□ -1.71
LIG1P18858 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.38□□□□□ -1.71
LIG1P18858 RN7SL703P-201ENST00000578485 302 ntBASIC4.38□□□□□ -1.71
LIG1P18858 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC4.38□□□□□ -1.71
LIG1P18858 AC127459.3-201ENST00000624328 466 ntBASIC4.38□□□□□ -1.71
LIG1P18858 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.38□□□□□ -1.71
LIG1P18858 AC244205.2-202ENST00000635781 342 ntBASIC4.38□□□□□ -1.71
LIG1P18858 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.37□□□□□ -1.71
LIG1P18858 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
LIG1P18858 AC002546.1-201ENST00000588041 2504 ntBASIC4.37□□□□□ -1.71
LIG1P18858 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
LIG1P18858 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
LIG1P18858 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
LIG1P18858 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
LIG1P18858 RN7SKP280-201ENST00000364196 304 ntBASIC4.37□□□□□ -1.71
LIG1P18858 RNU4-9P-201ENST00000364951 139 ntBASIC4.37□□□□□ -1.71
LIG1P18858 SNORD78.2-201ENST00000391076 69 ntBASIC4.37□□□□□ -1.71
LIG1P18858 RPL27AP8-201ENST00000424277 446 ntBASIC4.37□□□□□ -1.71
LIG1P18858 AC098614.2-201ENST00000426040 255 ntBASIC4.37□□□□□ -1.71
LIG1P18858 AC007919.1-201ENST00000429380 217 ntBASIC4.37□□□□□ -1.71
LIG1P18858 Y_RNA.644-201ENST00000459006 113 ntBASIC4.37□□□□□ -1.71
LIG1P18858 RN7SL330P-201ENST00000469709 307 ntBASIC4.37□□□□□ -1.71
LIG1P18858 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.37□□□□□ -1.71
LIG1P18858 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.37□□□□□ -1.71
LIG1P18858 Y_RNA.674-201ENST00000516362 113 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms