Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC097473.1-201ENST00000508142 408 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 RNU6-548P-201ENST00000517083 115 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC0.74□□□□□ -2.29
HMGB3O15347 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.74□□□□□ -2.29
HMGB3O15347 AC136932.1-201ENST00000574771 208 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.74□□□□□ -2.29
HMGB3O15347 MZT1P2-201ENST00000604387 248 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 AP000654.2-201ENST00000605633 586 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 AC025754.2-201ENST00000606491 432 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 AC013412.1-201ENST00000610687 192 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 AL365204.3-201ENST00000612448 685 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 AC099654.8-201ENST00000637757 681 ntBASIC0.74□□□□□ -2.29
HMGB3O15347 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.73□□□□□ -2.29
HMGB3O15347 RNU6-212P-201ENST00000362642 104 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 RNU1-17P-201ENST00000363022 152 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.73□□□□□ -2.29
HMGB3O15347 SNORA25-201ENST00000384384 134 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 MIR520A-201ENST00000384862 85 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 MIR548B-201ENST00000385247 97 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 AL357139.1-201ENST00000407792 426 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 AL606490.4-201ENST00000423117 127 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC0.73□□□□□ -2.29
HMGB3O15347 RPL32P28-201ENST00000443577 397 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 MTCO1P27-201ENST00000448269 226 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 RPL31P3-201ENST00000458430 332 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 AC134050.1-201ENST00000495088 933 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC0.73□□□□□ -2.29
HMGB3O15347 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC0.73□□□□□ -2.29
HMGB3O15347 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.73□□□□□ -2.29
HMGB3O15347 MIR4661-201ENST00000582720 75 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 AC022893.3-201ENST00000607665 437 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 AC012467.1-201ENST00000607740 256 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.73□□□□□ -2.29
HMGB3O15347 AC007792.1-201ENST00000623023 402 ntBASIC0.73□□□□□ -2.29
HMGB3O15347 RNU4-51P-201ENST00000364206 140 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 RNU6-395P-201ENST00000365662 106 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 MIR194-1-201ENST00000384892 85 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.72□□□□□ -2.29
HMGB3O15347 RNU4-62P-201ENST00000410125 130 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.72□□□□□ -2.29
HMGB3O15347 POLR2J4-204ENST00000418424 324 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 EBAG9P1-201ENST00000418955 543 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.72□□□□□ -2.29
HMGB3O15347 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC0.72□□□□□ -2.29
HMGB3O15347 AL591212.2-201ENST00000433923 257 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 MTND1P30-201ENST00000441241 901 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 NDUFAF4P2-201ENST00000445374 520 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
HMGB3O15347 AL583843.1-201ENST00000456070 346 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 RNA5SP269-201ENST00000459032 137 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 RNA5SP437-201ENST00000517249 129 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.72□□□□□ -2.29
HMGB3O15347 CBX3P8-201ENST00000532412 525 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC0.72□□□□□ -2.29
HMGB3O15347 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.72□□□□□ -2.29
HMGB3O15347 AL391646.1-201ENST00000603860 190 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 BX284668.6-201ENST00000606899 438 ntBASIC0.72□□□□□ -2.29
HMGB3O15347 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC0.72□□□□□ -2.29
HMGB3O15347 RNA5SP126-201ENST00000365092 109 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 SNORD116-20-201ENST00000384529 92 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 MIR515-2-201ENST00000384883 83 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 MIR515-1-201ENST00000384884 83 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 MIR100-201ENST00000385259 80 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
HMGB3O15347 SNORA17.3-201ENST00000391159 129 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 MIR1305-201ENST00000408300 86 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 Y_RNA.623-201ENST00000411128 95 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 AC004965.1-201ENST00000413033 213 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.71□□□□□ -2.3
HMGB3O15347 MTCYBP5-201ENST00000423752 1135 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 AC013262.1-201ENST00000426710 252 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 RPS6P15-201ENST00000431996 751 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 CALM1P1-201ENST00000442082 433 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 HMGN2P18-201ENST00000450680 270 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 RNU7-95P-201ENST00000459222 64 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC0.71□□□□□ -2.3
HMGB3O15347 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.71□□□□□ -2.3
HMGB3O15347 AC091163.3-201ENST00000518269 1144 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 CYCSP23-201ENST00000519781 313 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 OR8K2P-201ENST00000524645 927 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.71□□□□□ -2.3
HMGB3O15347 AP000873.5-201ENST00000533906 236 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 HMGB1P33-201ENST00000563485 527 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.71□□□□□ -2.3
HMGB3O15347 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 BNIP3P31-201ENST00000604515 566 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 AC211469.2-201ENST00000605461 205 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 AL355816.2-201ENST00000610049 647 ntBASIC0.71□□□□□ -2.3
HMGB3O15347 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.71□□□□□ -2.3
HMGB3O15347 MIR340-201ENST00000362125 95 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 RNU5A-8P-201ENST00000364102 114 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 MIR146A-201ENST00000385201 99 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 RNA5SP213-201ENST00000391031 106 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 AC006461.1-201ENST00000412637 326 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.7□□□□□ -2.3
HMGB3O15347 RPS15AP12-201ENST00000419498 388 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 SNX2P2-201ENST00000424553 323 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 TIMM9P1-201ENST00000436122 256 ntBASIC0.7□□□□□ -2.3
HMGB3O15347 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms