Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RNU1-57P-201ENST00000384491 166 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 MIR1289-2-201ENST00000408360 111 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AC138623.1-201ENST00000418060 216 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.05□□□□□ -1.92
NPHP1O15259 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.05□□□□□ -1.92
NPHP1O15259 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.05□□□□□ -1.92
NPHP1O15259 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.05□□□□□ -1.92
NPHP1O15259 IFNA11P-201ENST00000446352 526 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AL122001.1-201ENST00000457027 370 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.05□□□□□ -1.92
NPHP1O15259 AC090515.1-201ENST00000465295 476 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AC117503.1-201ENST00000472241 394 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.05□□□□□ -1.92
NPHP1O15259 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.05□□□□□ -1.92
NPHP1O15259 AF213884.2-201ENST00000510417 903 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.05□□□□□ -1.92
NPHP1O15259 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.05□□□□□ -1.92
NPHP1O15259 AP003034.1-201ENST00000534621 422 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AC004486.1-201ENST00000546846 233 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AL133241.1-201ENST00000556832 487 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 MIR1273D-201ENST00000577266 86 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AC090897.2-201ENST00000581715 130 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.05□□□□□ -1.92
NPHP1O15259 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.05□□□□□ -1.92
NPHP1O15259 AC073410.2-201ENST00000603240 332 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 AL138963.2-201ENST00000605137 226 ntBASIC3.05□□□□□ -1.92
NPHP1O15259 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.05□□□□□ -1.92
NPHP1O15259 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
NPHP1O15259 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
NPHP1O15259 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
NPHP1O15259 OR5H15-201ENST00000383696 930 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 Y_RNA.559-201ENST00000384686 107 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.04□□□□□ -1.92
NPHP1O15259 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.04□□□□□ -1.92
NPHP1O15259 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.04□□□□□ -1.92
NPHP1O15259 DNAJC19P4-201ENST00000440115 345 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.04□□□□□ -1.92
NPHP1O15259 AC027673.1-201ENST00000456245 405 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 snoU13.23-201ENST00000458863 104 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 RNU7-180P-201ENST00000459240 63 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 AC073901.1-201ENST00000462471 408 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 AC140059.1-201ENST00000489238 361 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.04□□□□□ -1.92
NPHP1O15259 AC109329.1-201ENST00000518744 317 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.04□□□□□ -1.92
NPHP1O15259 CBX3P7-201ENST00000532876 502 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.04□□□□□ -1.92
NPHP1O15259 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.04□□□□□ -1.92
NPHP1O15259 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.04□□□□□ -1.92
NPHP1O15259 MIR5583-1-201ENST00000580941 59 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 AC025754.2-201ENST00000606491 432 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 AC104073.3-201ENST00000610942 955 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 AL354950.2-201ENST00000617939 290 ntBASIC3.04□□□□□ -1.92
NPHP1O15259 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
NPHP1O15259 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC3.04□□□□□ -1.92
NPHP1O15259 SNORA38-201ENST00000363946 132 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 Y_RNA.194-201ENST00000363985 102 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 Y_RNA.399-201ENST00000383955 105 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 Y_RNA.480-201ENST00000384364 102 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 RNU4-26P-201ENST00000410270 107 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.03□□□□□ -1.92
NPHP1O15259 AC008267.5-201ENST00000424928 265 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 AL591806.2-201ENST00000433122 173 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 AL606489.2-201ENST00000433886 234 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.03□□□□□ -1.92
NPHP1O15259 AC096638.1-201ENST00000444678 216 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.03□□□□□ -1.92
NPHP1O15259 AL163973.1-201ENST00000484753 577 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 AP005902.1-201ENST00000521358 186 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.03□□□□□ -1.92
NPHP1O15259 PSMA3P-201ENST00000555485 635 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
NPHP1O15259 AC004223.2-201ENST00000590309 544 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 AL713866.2-201ENST00000603579 219 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 AP001330.5-201ENST00000607176 411 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 AC103591.3-201ENST00000608684 209 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
NPHP1O15259 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
NPHP1O15259 AC139792.3-201ENST00000623525 224 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 AP003400.5-201ENST00000624827 617 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 U4.7-201ENST00000638126 106 ntBASIC3.03□□□□□ -1.92
NPHP1O15259 MTND4P14-201ENST00000435799 1354 ntBASIC3.02□□□□□ -1.93
NPHP1O15259 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
NPHP1O15259 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
NPHP1O15259 SNORD56.1-201ENST00000362913 68 ntBASIC3.02□□□□□ -1.93
NPHP1O15259 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
NPHP1O15259 RNA5SP390-201ENST00000410191 113 ntBASIC3.02□□□□□ -1.93
NPHP1O15259 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.02□□□□□ -1.93
NPHP1O15259 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.02□□□□□ -1.93
NPHP1O15259 RPL23AP49-201ENST00000492925 468 ntBASIC3.02□□□□□ -1.93
NPHP1O15259 AC026436.1-201ENST00000510537 270 ntBASIC3.02□□□□□ -1.93
NPHP1O15259 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.02□□□□□ -1.93
NPHP1O15259 SNORA40.12-201ENST00000516329 111 ntBASIC3.02□□□□□ -1.93
NPHP1O15259 SNORA25.17-201ENST00000517184 124 ntBASIC3.02□□□□□ -1.93
NPHP1O15259 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.02□□□□□ -1.93
NPHP1O15259 AC023050.3-201ENST00000541142 333 ntBASIC3.02□□□□□ -1.93
NPHP1O15259 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.02□□□□□ -1.93
NPHP1O15259 MIR5739-201ENST00000619803 80 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms