Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 EI24P2-201ENST00000397776 1076 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 AC099548.1-201ENST00000421443 426 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 AC073261.1-201ENST00000429409 121 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 RNU7-116P-201ENST00000516940 62 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 AC097639.2-201ENST00000603159 172 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 RPSAP73-201ENST00000614820 330 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 TCL6_2.1-201ENST00000615162 119 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 AC100827.5-201ENST00000615883 426 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 AC018692.3-201ENST00000623929 123 ntBASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VPS9D1Q9Y2B5 AC004817.4-201ENST00000602396 3625 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AC063976.2-201ENST00000425667 3556 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 MAPK10-320ENST00000641462 6696 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AC007256.1-201ENST00000392253 2765 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AC004925.1-201ENST00000624256 2706 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 Y_RNA.17-201ENST00000362433 111 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 SNORD114-7-201ENST00000362520 77 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 Y_RNA.91-201ENST00000363042 107 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 RNU6-778P-201ENST00000363269 103 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 RNU1-64P-201ENST00000365443 163 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 DYNLT3P1-201ENST00000378574 347 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 SNORA19.1-201ENST00000410656 129 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 RPL23AP1-201ENST00000428990 471 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AL354714.3-201ENST00000447284 493 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 RPL37P4-201ENST00000448908 268 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 RPL39P39-201ENST00000455840 151 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AC009127.1-201ENST00000467090 155 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AC108022.1-201ENST00000493466 478 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AC008953.1-201ENST00000497334 318 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 RNU6-513P-201ENST00000516104 104 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 MIR5009-201ENST00000578736 100 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 MIR1269B-201ENST00000580405 75 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AC090897.2-201ENST00000581715 130 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 FAM71BP1-201ENST00000604431 523 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 AC005562.2-201ENST00000618264 111 ntBASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS9D1Q9Y2B5 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 U3.8-201ENST00000363675 217 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 SNORA58B-201ENST00000364259 136 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 RNU1-73P-201ENST00000383971 164 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 U3.32-201ENST00000408116 212 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 AC008134.1-201ENST00000420943 193 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 AC068287.1-201ENST00000430283 295 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 AC022137.1-201ENST00000483735 151 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 SRIP1-201ENST00000489235 288 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 RN7SKP21-201ENST00000516503 220 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 RNA5SP34-201ENST00000516887 130 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 AP005432.2-201ENST00000608162 586 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 C4BPAP1-201ENST00000415474 1893 ntBASIC5.05□□□□□ -1.6
VPS9D1Q9Y2B5 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 STX3-208ENST00000641815 3236 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 MIR302B-201ENST00000362188 73 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 RNU1-43P-201ENST00000365052 165 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 RNU6-1280P-201ENST00000365211 107 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 U3.15-201ENST00000365398 212 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AC092047.1-201ENST00000424997 240 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AC002075.2-201ENST00000425207 252 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AC027124.2-201ENST00000428249 105 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 RPS29P9-201ENST00000440360 171 ntBASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS9D1Q9Y2B5 AC009963.2-201ENST00000453431 138 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms