Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AP003392.2-201ENST00000527269 208 ntBASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AGGF1P4-201ENST00000568249 801 ntBASIC2.14□□□□□ -2.07
FOXA2Q9Y261 MTND1P15-201ENST00000579262 949 ntBASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AC091135.1-201ENST00000585943 307 ntBASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AC060766.3-201ENST00000591442 263 ntBASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AL136363.2-201ENST00000604173 851 ntBASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AC012640.5-201ENST00000623897 319 ntBASIC2.14□□□□□ -2.07
FOXA2Q9Y261 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.14□□□□□ -2.07
FOXA2Q9Y261 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
FOXA2Q9Y261 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 RNU6-266P-201ENST00000364225 107 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AL606923.1-201ENST00000406616 190 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 SNORD56-201ENST00000413522 71 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AL031274.1-201ENST00000450334 232 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AP000705.1-201ENST00000454567 350 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AL122001.1-201ENST00000457027 370 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AL163973.1-201ENST00000484753 577 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 GTF3AP2-201ENST00000557014 266 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 MIR5092-201ENST00000583139 88 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AC107304.1-201ENST00000604229 296 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AC123912.5-201ENST00000605470 343 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 AP001596.2-201ENST00000608410 312 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 uc_338.34-201ENST00000617467 174 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 MIR203B-201ENST00000636080 86 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.13□□□□□ -2.07
FOXA2Q9Y261 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
FOXA2Q9Y261 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 snoU2_19.1-201ENST00000362361 80 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 Y_RNA.51-201ENST00000362725 102 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 RNU6-859P-201ENST00000362728 107 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 Y_RNA.381-201ENST00000365666 102 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 DEFA7P-201ENST00000382676 285 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 Y_RNA.399-201ENST00000383955 105 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 RNU6-1274P-201ENST00000384557 107 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 MIR29B2-201ENST00000385055 81 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 SNORD37.1-201ENST00000390968 65 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 SNORD23.1-201ENST00000408212 104 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AL663109.1-201ENST00000411498 844 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AF274854.1-201ENST00000413236 615 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AL590556.1-201ENST00000423231 483 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 RNU7-167P-201ENST00000459160 62 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 RPL30P1-201ENST00000488676 339 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AC091133.4-201ENST00000511142 308 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 TBCAP3-201ENST00000512475 312 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 RNU6-405P-201ENST00000516637 110 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 SNORA25.17-201ENST00000517184 124 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 MTND4P7-201ENST00000523876 130 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AC009063.1-201ENST00000563342 702 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AP005136.1-201ENST00000579765 429 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 MIR5583-1-201ENST00000580941 59 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AC087683.1-201ENST00000591187 441 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 ELOCP5-201ENST00000604924 333 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AL159153.1-201ENST00000619688 317 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 AC139792.3-201ENST00000623525 224 ntBASIC2.12□□□□□ -2.07
FOXA2Q9Y261 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
FOXA2Q9Y261 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AL354685.2-201ENST00000448218 1447 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 SNORA80A-201ENST00000363922 136 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 RNU6-1222P-201ENST00000384615 107 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 RNA5SP210-201ENST00000391034 120 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 RNU6-1158P-201ENST00000391167 107 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 RNU2-32P-201ENST00000411193 191 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 RNU6-293P-201ENST00000411259 106 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AL353193.1-201ENST00000421444 268 ntBASIC2.11□□□□□ -2.07
FOXA2Q9Y261 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.11□□□□□ -2.07
FOXA2Q9Y261 AC011816.1-201ENST00000441346 546 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms