Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 LRRC34P2-201ENST00000514850 553 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 RNU6-506P-201ENST00000516553 94 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 Y_RNA.693-201ENST00000516641 110 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 RNU6-835P-201ENST00000516974 104 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AC021269.2-201ENST00000532318 330 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AC010186.2-204ENST00000537668 439 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AK6P1-201ENST00000540219 478 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 MIR4658-201ENST00000584344 65 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AL356575.1-201ENST00000603008 283 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AC093788.1-201ENST00000609356 927 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AL031601.2-202ENST00000622650 282 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AP003400.5-201ENST00000624827 617 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.58□□□□□ -2
CPSF3Q9UKF6 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 SNORA69-201ENST00000383895 132 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 MIR147B-201ENST00000390185 80 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 U6atac.2-201ENST00000408644 118 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 CCDC34P1-201ENST00000507441 517 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 TBCAP3-201ENST00000512475 312 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 AP004607.1-201ENST00000524456 203 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 AC016957.1-201ENST00000534895 309 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 MTCO3P23-201ENST00000561363 289 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.58□□□□□ -2
CPSF3Q9UKF6 MIR5571-201ENST00000577998 113 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 MIR3199-1-201ENST00000582434 88 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.58□□□□□ -2
CPSF3Q9UKF6 MIR4424-201ENST00000585257 86 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 AL021997.1-201ENST00000605757 193 ntBASIC2.58□□□□□ -2
CPSF3Q9UKF6 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CPSF3Q9UKF6 MIR21-201ENST00000362134 72 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 SNORA38-201ENST00000363946 132 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 RNU6-434P-201ENST00000384376 107 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 Y_RNA.516-201ENST00000384541 124 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 PRPS1P1-201ENST00000445305 876 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 AL441985.1-201ENST00000457727 251 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 RNU6-261P-201ENST00000459506 102 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 AC073901.1-201ENST00000462471 408 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 RPS27P27-201ENST00000498779 255 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 Y_RNA.704-201ENST00000516851 102 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 AL512360.1-201ENST00000555346 234 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 AC060766.3-201ENST00000591442 263 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 AL670379.10-201ENST00000604330 253 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 AL670379.9-201ENST00000605428 253 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 AC138627.2-201ENST00000624202 601 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 SCARNA4-202ENST00000625402 129 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 AC080100.1-201ENST00000624239 5356 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 AL359854.1-201ENST00000614203 1594 ntBASIC2.57□□□□□ -2
CPSF3Q9UKF6 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
CPSF3Q9UKF6 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.56□□□□□ -2
CPSF3Q9UKF6 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 Y_RNA.481-201ENST00000384373 102 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.56□□□□□ -2
CPSF3Q9UKF6 AL133475.1-201ENST00000404414 305 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 TIMM9P3-201ENST00000428659 274 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 C8orf59P1-201ENST00000429930 303 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 Z98742.2-201ENST00000431564 187 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 CR769767.1-201ENST00000436337 346 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 RPL7P43-201ENST00000478876 753 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 MTAPP1-201ENST00000489154 819 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 HMGB1P33-201ENST00000563485 527 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 MIR4765-201ENST00000585007 77 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.56□□□□□ -2
CPSF3Q9UKF6 AC012557.2-201ENST00000605919 418 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 AC069294.1-201ENST00000608397 350 ntBASIC2.56□□□□□ -2
CPSF3Q9UKF6 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 186 ms