Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL353689.1-201ENST00000438895 199 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 AC006512.1-201ENST00000468816 291 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 RPL21P99-201ENST00000480369 423 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 AC007834.2-201ENST00000536310 343 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 MIR5007-201ENST00000583098 95 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 CLIC4P2-201ENST00000601934 717 ntBASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.08□□□□□ -1.92
CHMP4AQ9BY43 SNORA16B-201ENST00000364674 135 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 RNU4-48P-201ENST00000365559 182 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 RNU6-116P-201ENST00000384042 109 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 U3.40-201ENST00000408706 208 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 MTND1P23-201ENST00000416931 372 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 AC009963.1-201ENST00000417265 157 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 AL022238.1-201ENST00000442557 355 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 RPL32P28-201ENST00000443577 397 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 MTCO3P9-201ENST00000506989 781 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 AC026436.1-201ENST00000510537 270 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 MRPS17P9-201ENST00000511924 393 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 OSBPL9P5-201ENST00000542581 171 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 SEPT7P9-203ENST00000604116 343 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 AC005296.1-201ENST00000616145 209 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 AC072046.2-201ENST00000618366 268 ntBASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.07□□□□□ -1.92
CHMP4AQ9BY43 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 U3.13-201ENST00000364804 214 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 RNU6-74P-201ENST00000384235 107 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 SNORA46.1-201ENST00000391069 153 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 RNU4-53P-201ENST00000410828 140 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AC133104.1-201ENST00000429100 218 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 KPNA2P1-201ENST00000458289 1591 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 SNORA18.6-201ENST00000516792 115 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AC233702.2-202ENST00000562547 291 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AC012414.6-201ENST00000568241 401 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AC008088.1-201ENST00000580993 280 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 VN1R107P-201ENST00000601784 209 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AL096840.1-201ENST00000603287 93 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AC011155.2-201ENST00000623202 216 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 U4.7-201ENST00000638126 106 ntBASIC3.06□□□□□ -1.92
CHMP4AQ9BY43 AC080100.1-201ENST00000624239 5356 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 RNU6-527P-201ENST00000363425 104 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 RNU6-1274P-201ENST00000384557 107 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 RPS27AP8-201ENST00000452665 445 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 AC022447.4-201ENST00000504053 364 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 AP001893.2-201ENST00000526949 202 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 MIR4775-201ENST00000581168 75 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 Z94722.1-201ENST00000604328 474 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 AC121247.2-201ENST00000604776 136 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 AL356157.2-201ENST00000605122 111 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 AC099842.1-201ENST00000619919 596 ntBASIC3.05□□□□□ -1.92
CHMP4AQ9BY43 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 SNORA62.1-201ENST00000364287 154 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 RNU6-1032P-201ENST00000384100 107 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 RNU6-606P-201ENST00000384721 111 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 SNORA80E-201ENST00000384744 137 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 RNU2-3P-201ENST00000410144 191 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 RNU6-1140P-201ENST00000410517 106 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 RN7SKP192-201ENST00000411291 327 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 MTATP6P17-201ENST00000431030 672 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 RPL39P29-201ENST00000447779 157 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 AC132942.1-201ENST00000486753 483 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 RNU6ATAC9P-201ENST00000516210 116 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 SNORD53-201ENST00000579969 78 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 AC073539.2-201ENST00000597113 165 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 AC064872.1-201ENST00000604823 1072 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 AC073114.1-201ENST00000612027 490 ntBASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CHMP4AQ9BY43 RNU1-51P-201ENST00000365345 176 ntBASIC3.03□□□□□ -1.92
CHMP4AQ9BY43 RNA5SP450-201ENST00000411206 102 ntBASIC3.03□□□□□ -1.92
CHMP4AQ9BY43 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.03□□□□□ -1.92
CHMP4AQ9BY43 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.03□□□□□ -1.92
CHMP4AQ9BY43 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.03□□□□□ -1.92
CHMP4AQ9BY43 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms