Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 AP000553.6-201ENST00000641242 118 ntBASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
LRFN3Q9BTN0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 RNU6-490P-201ENST00000362985 107 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 RNU6-238P-201ENST00000363313 106 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 MIR10A-201ENST00000385043 110 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 AL357075.1-201ENST00000404107 726 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 AL138878.1-201ENST00000405131 347 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 Y_RNA.594-201ENST00000410373 140 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 RNU4-47P-201ENST00000410876 114 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 AL592148.1-201ENST00000413568 445 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 CYCSP33-201ENST00000414485 327 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 HIGD1AP11-201ENST00000438361 280 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 AC113155.1-201ENST00000511141 769 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 RNU6-1183P-201ENST00000517054 60 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 AP000867.2-201ENST00000532468 320 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 U4.6-201ENST00000621618 127 ntBASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
LRFN3Q9BTN0 Z83843.1-201ENST00000604070 3685 ntBASIC3.59□□□□□ -1.84
LRFN3Q9BTN0 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.59□□□□□ -1.84
LRFN3Q9BTN0 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.59□□□□□ -1.84
LRFN3Q9BTN0 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RNU6-379P-201ENST00000363813 104 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RNU6-1303P-201ENST00000364841 107 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 MIR513A2-201ENST00000385249 127 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RNA5SP424-201ENST00000390988 115 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RNA5SP39-201ENST00000411245 120 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RNA5SP508-201ENST00000411327 119 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 DPH3P2-201ENST00000422618 250 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RPL7P37-201ENST00000425095 738 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 AL359672.1-201ENST00000442302 409 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 AC117503.1-201ENST00000472241 394 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RNU1-86P-201ENST00000516108 154 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RNU1-107P-201ENST00000516617 154 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RNU6-1332P-201ENST00000516666 104 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RNU1-54P-201ENST00000517181 120 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 AL391261.3-201ENST00000557194 520 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 H3F3AP1-201ENST00000559984 334 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 SCARNA4-202ENST00000625402 129 ntBASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
LRFN3Q9BTN0 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AC010680.1-201ENST00000590024 3590 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 RNU6-198P-201ENST00000384258 104 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 Y_RNA.556-201ENST00000384677 113 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AC010099.1-201ENST00000455434 375 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 RNU7-23P-201ENST00000459465 62 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AC116655.1-201ENST00000508324 901 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 RNU6-120P-201ENST00000516077 103 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AC110491.1-201ENST00000562191 2010 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AC005592.1-201ENST00000566527 1640 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 OR1M4P-201ENST00000589199 287 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AL161629.2-201ENST00000615347 275 ntBASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
LRFN3Q9BTN0 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LRFN3Q9BTN0 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LRFN3Q9BTN0 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
LRFN3Q9BTN0 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.56□□□□□ -1.84
LRFN3Q9BTN0 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.56□□□□□ -1.84
LRFN3Q9BTN0 AC091152.2-201ENST00000591628 2569 ntBASIC3.56□□□□□ -1.84
LRFN3Q9BTN0 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
LRFN3Q9BTN0 RNU1-15P-201ENST00000353977 144 ntBASIC3.56□□□□□ -1.84
LRFN3Q9BTN0 RNU6-99P-201ENST00000364721 107 ntBASIC3.56□□□□□ -1.84
LRFN3Q9BTN0 RNU6-384P-201ENST00000364900 104 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms