Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RPL23AP30-201ENST00000432419 501 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 MTCO3P5-201ENST00000433620 714 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 NDUFB1P2-201ENST00000449477 176 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AL583843.1-201ENST00000456070 346 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AC018868.1-201ENST00000491307 315 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 OR5AL2P-201ENST00000532185 920 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 RPL21P5-201ENST00000554662 472 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 MIR4299-201ENST00000577899 72 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AL136363.2-201ENST00000604173 851 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AL670379.2-201ENST00000604983 252 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AL670379.4-201ENST00000605279 254 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 U6.42-201ENST00000618440 107 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AC024940.5-201ENST00000622889 474 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AL160394.1-201ENST00000624765 724 ntBASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.11□□□□□ -2.07
ZNF540Q8NDQ6 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 U8.2-201ENST00000363156 134 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 RNU1-23P-201ENST00000363361 144 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 Y_RNA.505-201ENST00000384489 102 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 MIR186-201ENST00000384988 86 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AL591034.2-201ENST00000402839 359 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 Y_RNA.623-201ENST00000411128 95 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AL663109.1-201ENST00000411498 844 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC096920.1-201ENST00000423991 241 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 MTND2P29-201ENST00000438595 412 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC244505.5-201ENST00000443639 207 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 HIGD1AP2-201ENST00000446367 280 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 GAPDHP17-201ENST00000449858 1001 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC007182.2-201ENST00000489251 402 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC112204.1-201ENST00000502591 103 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC026436.1-201ENST00000510537 270 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 RNA5SP320-201ENST00000516263 124 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 Y_RNA.689-201ENST00000516589 107 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 RNU6-405P-201ENST00000516637 110 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 CR383656.8-201ENST00000549046 145 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 SEPT7P9-203ENST00000604116 343 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC012557.2-201ENST00000605919 418 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC006566.1-201ENST00000608943 513 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC087241.4-201ENST00000612441 480 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC022202.1-201ENST00000613515 211 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 AC098679.4-201ENST00000624241 654 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 SCARNA4-202ENST00000625402 129 ntBASIC2.1□□□□□ -2.07
ZNF540Q8NDQ6 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 RNA5SP276-201ENST00000362580 94 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 RNU5F-7P-201ENST00000363696 115 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AL591416.1-201ENST00000404015 867 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 RNU6-195P-201ENST00000411352 109 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 UBE2V1P10-201ENST00000414685 269 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC016831.2-201ENST00000417179 352 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AL365400.1-201ENST00000431854 640 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AL121890.1-201ENST00000435457 205 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC079448.1-201ENST00000449377 373 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 UBL5P3-201ENST00000475112 231 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 RN7SL636P-201ENST00000497504 294 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC091133.4-201ENST00000511142 308 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AP003033.1-201ENST00000527244 415 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 BNIP3P8-201ENST00000597863 560 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AL138889.2-201ENST00000603883 242 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AL359999.1-201ENST00000604513 294 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC090578.1-201ENST00000604955 591 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC004492.1-201ENST00000607036 742 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC104073.3-201ENST00000610942 955 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 HULC.1-201ENST00000612720 240 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC108479.2-201ENST00000617314 601 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 AC010378.1-201ENST00000619270 362 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 MIR1291-201ENST00000627649 87 ntBASIC2.09□□□□□ -2.07
ZNF540Q8NDQ6 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 MTCO3P41-201ENST00000414801 328 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AC092809.3-201ENST00000415453 231 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 RPS15AP12-201ENST00000419498 388 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AC008267.5-201ENST00000424928 265 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 RPS15AP28-201ENST00000435088 386 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms