Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AP000916.1-201ENST00000533869 835 ntBASIC-0.23□□□□□ -2.45
LINC00643Q86TS7 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC-0.23□□□□□ -2.45
LINC00643Q86TS7 EIF1P4-201ENST00000572664 335 ntBASIC-0.23□□□□□ -2.45
LINC00643Q86TS7 MIR1248-201ENST00000629190 106 ntBASIC-0.23□□□□□ -2.45
LINC00643Q86TS7 MIR103A1-201ENST00000362165 78 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 RNU6-45P-201ENST00000384471 107 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 AL359704.1-201ENST00000411586 781 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 AC019178.2-201ENST00000423595 505 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 AC234064.1-201ENST00000436312 247 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 snoU13.15-201ENST00000459407 104 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 RNU6-528P-201ENST00000516926 100 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 AC103833.1-201ENST00000517442 172 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 SUMO2P16-201ENST00000519475 264 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 IL7-206ENST00000520269 456 ntTSL 3 BASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 BPTFP1-201ENST00000579209 492 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 VN1R88P-201ENST00000596787 292 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 VN1R80P-201ENST00000597126 338 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 AL031281.1-201ENST00000604049 488 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 AL451064.1-201ENST00000607718 471 ntBASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC-0.24□□□□□ -2.45
LINC00643Q86TS7 SEC63P2-201ENST00000503863 1939 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 LINC02555-201ENST00000563933 1951 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 RNA5SP62-201ENST00000363457 110 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 MIR23B-201ENST00000384832 97 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 RNA5SP219-201ENST00000390940 113 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 TXNL1P1-201ENST00000429528 554 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 SNRPFP3-201ENST00000457792 225 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 AC114982.2-201ENST00000461396 358 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 RPL39P38-201ENST00000467018 153 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 AC104982.1-201ENST00000478775 574 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 MTND1P3-201ENST00000484956 952 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 HMGN1P7-201ENST00000491722 313 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 CYCTP-201ENST00000504253 315 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 AP000873.5-201ENST00000533906 236 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 MIR4768-201ENST00000585270 74 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 AC004853.1-201ENST00000604902 698 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 RNU6-87P-201ENST00000607561 108 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 AL731566.2-201ENST00000618971 317 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 AC100810.6-201ENST00000638068 285 ntBASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC-0.25□□□□□ -2.45
LINC00643Q86TS7 SNORD3E-201ENST00000362899 217 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AC138623.1-201ENST00000418060 216 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 BTF3L4P3-201ENST00000418879 476 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AL078601.1-201ENST00000444542 271 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 snoU13.30-201ENST00000458951 104 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 RPS26P48-201ENST00000491713 339 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 HMGN1P12-201ENST00000499125 195 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AC008628.1-201ENST00000508663 265 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AC079140.3-201ENST00000511111 550 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AL442163.3-201ENST00000554110 156 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AC008015.1-201ENST00000555505 465 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AC090888.2-201ENST00000559765 1144 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 MIR4711-201ENST00000578274 70 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AC025627.3-201ENST00000582078 182 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 MIR92B-201ENST00000607575 96 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 AC123767.1-202ENST00000620407 817 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 SNORD3E-202ENST00000627253 216 ntBASIC-0.26□□□□□ -2.45
LINC00643Q86TS7 SNORA63D-201ENST00000364359 132 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 Y_RNA.333-201ENST00000365274 102 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 SNORA16.2-201ENST00000390991 127 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 AC005345.1-201ENST00000431868 217 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 AL591212.2-201ENST00000433923 257 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 NDUFA5P7-201ENST00000452914 242 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 OARD1-209ENST00000471367 401 ntTSL 2 BASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 RNA5SP227-201ENST00000516184 113 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 AC093012.1-202ENST00000549403 582 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 AL132657.2-201ENST00000564417 358 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 SNORA4-201ENST00000584302 138 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 AC025754.2-201ENST00000606491 432 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 AL158211.4-201ENST00000606988 584 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 MIR4315-1-201ENST00000636800 73 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 MIR4315-2-201ENST00000640925 73 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 AL159152.1-201ENST00000635019 2587 ntBASIC-0.27□□□□□ -2.45
LINC00643Q86TS7 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 RNU6-115P-201ENST00000364310 107 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 MIR483-201ENST00000385070 76 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 RNU6-1176P-201ENST00000390955 107 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 RNA5SP222-201ENST00000411039 105 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 MTCYBP15-201ENST00000433123 1127 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 AC005094.1-201ENST00000440420 368 ntBASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC-0.28□□□□□ -2.45
LINC00643Q86TS7 RPS20P10-201ENST00000451209 253 ntBASIC-0.28□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 144.9 ms