Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CLIC4P2-201ENST00000601934 717 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 AC012065.4-201ENST00000602445 679 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC0.22□□□□□ -2.37
USF3Q68DE3 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.22□□□□□ -2.37
USF3Q68DE3 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC0.22□□□□□ -2.37
USF3Q68DE3 RNU6-819P-201ENST00000364116 107 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 MIR597-201ENST00000384968 97 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 SNORA40C-201ENST00000391285 128 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 TAF13P2-201ENST00000416876 286 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 PSMA6P3-201ENST00000428242 164 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC0.22□□□□□ -2.37
USF3Q68DE3 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC0.22□□□□□ -2.37
USF3Q68DE3 AC091435.1-201ENST00000505442 584 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC0.22□□□□□ -2.37
USF3Q68DE3 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.22□□□□□ -2.37
USF3Q68DE3 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC0.22□□□□□ -2.37
USF3Q68DE3 AC012213.3-201ENST00000577199 777 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 AC005261.5-201ENST00000596280 355 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC0.22□□□□□ -2.37
USF3Q68DE3 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC0.22□□□□□ -2.37
USF3Q68DE3 AL132822.1-201ENST00000617063 513 ntBASIC0.22□□□□□ -2.37
USF3Q68DE3 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.21□□□□□ -2.38
USF3Q68DE3 RNU1-23P-201ENST00000363361 144 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 RNA5SP493-201ENST00000364115 91 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 RNU6-619P-201ENST00000365146 108 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 RNU6-910P-201ENST00000390844 107 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.21□□□□□ -2.38
USF3Q68DE3 TRBVB-201ENST00000477100 408 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 AC010460.2-201ENST00000509054 677 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 RNU5B-3P-201ENST00000516601 115 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC0.21□□□□□ -2.38
USF3Q68DE3 AC023050.2-201ENST00000544968 387 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 SNORA77B-201ENST00000578179 125 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 MIR4636-201ENST00000582271 80 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 SUMO2P14-201ENST00000604488 293 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 AC069304.2-201ENST00000605154 435 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 AC239868.4-201ENST00000608318 671 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 AF129408.1-201ENST00000608767 431 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 AC126177.8-201ENST00000618339 1015 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
USF3Q68DE3 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
USF3Q68DE3 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.21□□□□□ -2.38
USF3Q68DE3 SNORA2A-201ENST00000383885 135 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 MIR32-201ENST00000384965 70 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC0.21□□□□□ -2.38
USF3Q68DE3 RNU6-1054P-201ENST00000411293 104 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 AC006461.1-201ENST00000412637 326 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 AC138623.1-201ENST00000418060 216 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 ELOCP14-201ENST00000428070 331 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 RPL31P54-201ENST00000429803 370 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 UBE2V1P8-201ENST00000437166 265 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 ELOCP7-201ENST00000439968 331 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 MTND5P8-201ENST00000449817 1083 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 AP001324.2-201ENST00000461163 319 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.21□□□□□ -2.38
USF3Q68DE3 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.21□□□□□ -2.38
USF3Q68DE3 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.21□□□□□ -2.38
USF3Q68DE3 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.21□□□□□ -2.38
USF3Q68DE3 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC0.21□□□□□ -2.38
USF3Q68DE3 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.21□□□□□ -2.38
USF3Q68DE3 MTCO2P2-201ENST00000591258 225 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 VN1R88P-201ENST00000596787 292 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 AP000860.1-201ENST00000605250 559 ntBASIC0.21□□□□□ -2.38
USF3Q68DE3 RNA5SP327-201ENST00000362494 101 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 MTND5P14-201ENST00000441481 1267 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 AC244505.3-201ENST00000454598 187 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 RNU6-965P-201ENST00000516721 96 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 RN7SKP88-201ENST00000516847 250 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 RNU6-165P-201ENST00000517170 99 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 RNU6-889P-201ENST00000517189 103 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 AP001429.1-201ENST00000602568 530 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 7SK.8-201ENST00000612110 250 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 7SK.11-201ENST00000615477 250 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 7SK.13-201ENST00000622040 250 ntBASIC0.2□□□□□ -2.38
USF3Q68DE3 RNU4-67P-201ENST00000364569 141 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 MIR605-201ENST00000385078 83 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AL592310.1-201ENST00000414330 671 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC092634.6-201ENST00000418558 192 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.19□□□□□ -2.38
USF3Q68DE3 AL606489.2-201ENST00000433886 234 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 MTND2P24-201ENST00000453434 806 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 RPL26P26-201ENST00000480251 434 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 RPL30P1-201ENST00000488676 339 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AL160314.1-201ENST00000490836 438 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC0.19□□□□□ -2.38
USF3Q68DE3 AL020997.3-201ENST00000602843 359 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC091152.3-201ENST00000604227 325 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 NDUFA8P1-201ENST00000605525 367 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC098614.4-201ENST00000607601 462 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC010133.1-201ENST00000615809 842 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC240442.1-201ENST00000616055 283 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 Y_RNA.245-201ENST00000364493 95 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 MIR200A-201ENST00000384875 90 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 RNU2-28P-201ENST00000410457 189 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.19□□□□□ -2.38
USF3Q68DE3 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.19□□□□□ -2.38
USF3Q68DE3 DNAJA1P2-201ENST00000421360 1197 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms