Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AP000654.2-201ENST00000605633 586 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 AC069200.1-201ENST00000609511 323 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 AC084781.2-201ENST00000615568 161 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 AC126177.8-201ENST00000618339 1015 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 AL359854.1-201ENST00000614203 1594 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.01□□□□□ -1.77
SF3A1Q15459 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
SF3A1Q15459 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
SF3A1Q15459 SNORA63.1-201ENST00000362493 131 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 SNORD114-19-201ENST00000363072 75 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 Y_RNA.123-201ENST00000363338 102 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 U8.8-201ENST00000365399 135 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 RNY4P36-201ENST00000391116 96 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 MTCYBP4-201ENST00000401524 249 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.01□□□□□ -1.77
SF3A1Q15459 RPL23AP83-201ENST00000434984 473 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 Y_RNA.653-201ENST00000459091 95 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 AC006483.1-201ENST00000487308 313 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.01□□□□□ -1.77
SF3A1Q15459 AC012493.2-201ENST00000595083 291 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 AC011494.1-201ENST00000596454 237 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 AC078795.3-201ENST00000602913 472 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 AL627309.6-201ENST00000606857 840 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 AL121772.2-201ENST00000614331 297 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 AC007792.1-201ENST00000623023 402 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.01□□□□□ -1.77
SF3A1Q15459 AL109809.4-201ENST00000603520 2185 ntBASIC4.01□□□□□ -1.77
SF3A1Q15459 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
SF3A1Q15459 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SF3A1Q15459 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4□□□□□ -1.77
SF3A1Q15459 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4□□□□□ -1.77
SF3A1Q15459 MIR30E-201ENST00000362104 92 ntBASIC4□□□□□ -1.77
SF3A1Q15459 RNU6-1188P-201ENST00000363795 107 ntBASIC4□□□□□ -1.77
SF3A1Q15459 U3.13-201ENST00000364804 214 ntBASIC4□□□□□ -1.77
SF3A1Q15459 Y_RNA.535-201ENST00000384612 99 ntBASIC4□□□□□ -1.77
SF3A1Q15459 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4□□□□□ -1.77
SF3A1Q15459 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4□□□□□ -1.77
SF3A1Q15459 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4□□□□□ -1.77
SF3A1Q15459 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4□□□□□ -1.77
SF3A1Q15459 RPL22P13-201ENST00000493291 347 ntBASIC4□□□□□ -1.77
SF3A1Q15459 HPRT1P3-201ENST00000539521 576 ntBASIC4□□□□□ -1.77
SF3A1Q15459 GLYCAM1-201ENST00000546596 285 ntBASIC4□□□□□ -1.77
SF3A1Q15459 MTCO3P13-201ENST00000577757 781 ntBASIC4□□□□□ -1.77
SF3A1Q15459 RPL23AP78-201ENST00000599928 470 ntBASIC4□□□□□ -1.77
SF3A1Q15459 RMST_8.1-201ENST00000610287 165 ntBASIC4□□□□□ -1.77
SF3A1Q15459 AC099778.2-201ENST00000610904 211 ntBASIC4□□□□□ -1.77
SF3A1Q15459 AC133104.2-201ENST00000615272 193 ntBASIC4□□□□□ -1.77
SF3A1Q15459 DLEU2_5.1-201ENST00000615567 84 ntBASIC4□□□□□ -1.77
SF3A1Q15459 AL161912.2-201ENST00000565707 3007 ntBASIC4□□□□□ -1.77
SF3A1Q15459 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC4□□□□□ -1.77
SF3A1Q15459 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.99□□□□□ -1.77
SF3A1Q15459 MTND5P30-201ENST00000452896 1731 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
SF3A1Q15459 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.99□□□□□ -1.77
SF3A1Q15459 RNA5SP124-201ENST00000362739 110 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 SNORD116-29-201ENST00000384516 83 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 MIR1289-1-201ENST00000408836 144 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 RNU6-55P-201ENST00000411092 107 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 NUP35P1-201ENST00000422734 947 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.99□□□□□ -1.77
SF3A1Q15459 RPL23AP50-201ENST00000434149 455 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 RPS29P27-201ENST00000463711 170 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 RPL23AP67-201ENST00000465341 474 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.99□□□□□ -1.77
SF3A1Q15459 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.99□□□□□ -1.77
SF3A1Q15459 Y_RNA.718-201ENST00000517110 102 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 SCARNA11.3-201ENST00000517276 130 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.99□□□□□ -1.77
SF3A1Q15459 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.99□□□□□ -1.77
SF3A1Q15459 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.99□□□□□ -1.77
SF3A1Q15459 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.99□□□□□ -1.77
SF3A1Q15459 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.99□□□□□ -1.77
SF3A1Q15459 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.99□□□□□ -1.77
SF3A1Q15459 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.99□□□□□ -1.77
SF3A1Q15459 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.99□□□□□ -1.77
SF3A1Q15459 AC090574.1-201ENST00000623186 233 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 MIR7515-201ENST00000637837 67 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 AC002543.1-201ENST00000299783 1954 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 AL513302.2-201ENST00000562313 1842 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SF3A1Q15459 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SF3A1Q15459 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.99□□□□□ -1.77
SF3A1Q15459 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.99□□□□□ -1.77
SF3A1Q15459 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.99□□□□□ -1.77
SF3A1Q15459 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SF3A1Q15459 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.98□□□□□ -1.77
SF3A1Q15459 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
SF3A1Q15459 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SF3A1Q15459 Y_RNA.11-201ENST00000362375 109 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 RNU6-525P-201ENST00000363685 104 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 RNU6-43P-201ENST00000384302 107 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 RNU6-1222P-201ENST00000384615 107 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.98□□□□□ -1.77
SF3A1Q15459 RPL23AP58-201ENST00000440453 469 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 AL031659.1-201ENST00000447075 539 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.98□□□□□ -1.77
SF3A1Q15459 FO393415.2-201ENST00000480085 343 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 RPS4XP22-201ENST00000480755 780 ntBASIC3.98□□□□□ -1.77
SF3A1Q15459 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms