Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC073308.1-201ENST00000623696 305 ntBASIC3.88□□□□□ -1.79
RNF4P78317 MIR492-201ENST00000638676 116 ntBASIC3.88□□□□□ -1.79
RNF4P78317 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.88□□□□□ -1.79
RNF4P78317 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
RNF4P78317 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.88□□□□□ -1.79
RNF4P78317 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
RNF4P78317 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
RNF4P78317 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
RNF4P78317 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
RNF4P78317 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
RNF4P78317 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
RNF4P78317 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
RNF4P78317 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
RNF4P78317 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
RNF4P78317 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.87□□□□□ -1.79
RNF4P78317 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
RNF4P78317 RNU4-90P-201ENST00000362773 141 ntBASIC3.87□□□□□ -1.79
RNF4P78317 Y_RNA.200-201ENST00000364018 102 ntBASIC3.87□□□□□ -1.79
RNF4P78317 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
RNF4P78317 Y_RNA.555-201ENST00000384673 110 ntBASIC3.87□□□□□ -1.79
RNF4P78317 MTHFD2P2-201ENST00000407725 247 ntBASIC3.87□□□□□ -1.79
RNF4P78317 AL159169.1-201ENST00000421119 127 ntBASIC3.87□□□□□ -1.79
RNF4P78317 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.87□□□□□ -1.79
RNF4P78317 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.87□□□□□ -1.79
RNF4P78317 AC011602.1-201ENST00000546484 331 ntBASIC3.87□□□□□ -1.79
RNF4P78317 AC022655.2-201ENST00000577280 318 ntBASIC3.87□□□□□ -1.79
RNF4P78317 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.87□□□□□ -1.79
RNF4P78317 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.87□□□□□ -1.79
RNF4P78317 RN7SL600P-201ENST00000581811 299 ntBASIC3.87□□□□□ -1.79
RNF4P78317 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.87□□□□□ -1.79
RNF4P78317 AC004792.1-201ENST00000614523 137 ntBASIC3.87□□□□□ -1.79
RNF4P78317 FTX_2.1-201ENST00000618816 94 ntBASIC3.87□□□□□ -1.79
RNF4P78317 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
RNF4P78317 HAUS6P2-201ENST00000433254 2404 ntBASIC3.87□□□□□ -1.79
RNF4P78317 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
RNF4P78317 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
RNF4P78317 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
RNF4P78317 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
RNF4P78317 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
RNF4P78317 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
RNF4P78317 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
RNF4P78317 AC016588.2-201ENST00000632484 3021 ntBASIC3.86□□□□□ -1.79
RNF4P78317 MIR1298-201ENST00000408783 112 ntBASIC3.86□□□□□ -1.79
RNF4P78317 AL139156.1-201ENST00000412785 841 ntBASIC3.86□□□□□ -1.79
RNF4P78317 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.86□□□□□ -1.79
RNF4P78317 AC005300.1-201ENST00000428401 373 ntBASIC3.86□□□□□ -1.79
RNF4P78317 AC004975.1-201ENST00000428733 208 ntBASIC3.86□□□□□ -1.79
RNF4P78317 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.86□□□□□ -1.79
RNF4P78317 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.86□□□□□ -1.79
RNF4P78317 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.86□□□□□ -1.79
RNF4P78317 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.86□□□□□ -1.79
RNF4P78317 AC006445.2-201ENST00000510061 472 ntBASIC3.86□□□□□ -1.79
RNF4P78317 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.86□□□□□ -1.79
RNF4P78317 IGLV3-26-201ENST00000520756 302 ntBASIC3.86□□□□□ -1.79
RNF4P78317 IGKV2D-19-201ENST00000523346 262 ntBASIC3.86□□□□□ -1.79
RNF4P78317 AL391261.3-201ENST00000557194 520 ntBASIC3.86□□□□□ -1.79
RNF4P78317 AC009163.5-201ENST00000575421 637 ntBASIC3.86□□□□□ -1.79
RNF4P78317 AC020914.4-201ENST00000597690 277 ntBASIC3.86□□□□□ -1.79
RNF4P78317 AC137590.2-201ENST00000619709 240 ntBASIC3.86□□□□□ -1.79
RNF4P78317 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.86□□□□□ -1.79
RNF4P78317 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.86□□□□□ -1.79
RNF4P78317 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
RNF4P78317 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.86□□□□□ -1.79
RNF4P78317 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
RNF4P78317 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
RNF4P78317 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
RNF4P78317 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
RNF4P78317 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
RNF4P78317 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
RNF4P78317 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.85□□□□□ -1.79
RNF4P78317 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.85□□□□□ -1.79
RNF4P78317 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
RNF4P78317 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
RNF4P78317 Y_RNA.270-201ENST00000364693 104 ntBASIC3.85□□□□□ -1.79
RNF4P78317 SNORD63-201ENST00000384262 68 ntBASIC3.85□□□□□ -1.79
RNF4P78317 HLFP1-201ENST00000402375 499 ntBASIC3.85□□□□□ -1.79
RNF4P78317 AC017079.2-201ENST00000416102 485 ntBASIC3.85□□□□□ -1.79
RNF4P78317 HMGN2P10-201ENST00000448085 265 ntBASIC3.85□□□□□ -1.79
RNF4P78317 AC012308.1-201ENST00000451232 178 ntBASIC3.85□□□□□ -1.79
RNF4P78317 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.85□□□□□ -1.79
RNF4P78317 RN7SL604P-201ENST00000492589 296 ntBASIC3.85□□□□□ -1.79
RNF4P78317 RPL7P47-201ENST00000497299 556 ntBASIC3.85□□□□□ -1.79
RNF4P78317 AC016632.1-201ENST00000503994 196 ntBASIC3.85□□□□□ -1.79
RNF4P78317 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
RNF4P78317 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.85□□□□□ -1.79
RNF4P78317 MIR5571-201ENST00000577998 113 ntBASIC3.85□□□□□ -1.79
RNF4P78317 AL359198.2-201ENST00000611836 194 ntBASIC3.85□□□□□ -1.79
RNF4P78317 MIR7702-201ENST00000621931 59 ntBASIC3.85□□□□□ -1.79
RNF4P78317 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
RNF4P78317 Z82217.1-201ENST00000625157 8149 ntBASIC3.85□□□□□ -1.79
RNF4P78317 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
RNF4P78317 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
RNF4P78317 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.85□□□□□ -1.79
RNF4P78317 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
RNF4P78317 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.85□□□□□ -1.79
RNF4P78317 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.84□□□□□ -1.79
RNF4P78317 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
RNF4P78317 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
RNF4P78317 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
RNF4P78317 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 139 ms