Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FAM157A-202ENST00000615155 405 ntBASIC2.99□□□□□ -1.93
HDAC4P56524 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.99□□□□□ -1.93
HDAC4P56524 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
HDAC4P56524 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.99□□□□□ -1.93
HDAC4P56524 RNU6-845P-201ENST00000362578 103 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 RNU5E-4P-201ENST00000364931 120 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 RNU6-851P-201ENST00000384565 107 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 FO393413.1-201ENST00000402892 195 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 SNORD88.1-201ENST00000408684 91 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AL096701.2-201ENST00000416920 238 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 USP9YP20-201ENST00000419224 558 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 MTCO3P46-201ENST00000425787 232 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AC022018.1-201ENST00000430685 241 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.98□□□□□ -1.93
HDAC4P56524 AC098614.3-201ENST00000438957 440 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AC107083.1-201ENST00000439643 279 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AC098831.1-201ENST00000440661 216 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.98□□□□□ -1.93
HDAC4P56524 RPL7P43-201ENST00000478876 753 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AC008628.2-201ENST00000502605 298 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AC079140.5-201ENST00000507882 310 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 MRPS36P2-201ENST00000512569 299 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.98□□□□□ -1.93
HDAC4P56524 AC022080.3-201ENST00000544433 482 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.98□□□□□ -1.93
HDAC4P56524 MIR3942-201ENST00000585264 109 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 MIR5692C1-201ENST00000585309 91 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AC011712.1-201ENST00000588959 234 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 AC090115.4-201ENST00000609970 188 ntBASIC2.98□□□□□ -1.93
HDAC4P56524 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.98□□□□□ -1.93
HDAC4P56524 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.98□□□□□ -1.93
HDAC4P56524 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
HDAC4P56524 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HDAC4P56524 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
HDAC4P56524 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.97□□□□□ -1.93
HDAC4P56524 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.97□□□□□ -1.93
HDAC4P56524 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HDAC4P56524 CBX3P1-201ENST00000325243 554 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 Y_RNA.70-201ENST00000362886 110 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 RNU6-266P-201ENST00000364225 107 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 SNORA32.2-201ENST00000384049 122 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 Y_RNA.480-201ENST00000384364 102 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 Y_RNA.530-201ENST00000384587 101 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 MIR181A2-201ENST00000384863 110 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 MIR512-1-201ENST00000384913 84 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 MIR10A-201ENST00000385043 110 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 MIR34A-201ENST00000385130 110 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HDAC4P56524 AC022028.1-201ENST00000412054 408 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 EEF1A1P41-201ENST00000414667 207 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 TOMM20P4-201ENST00000427861 435 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.97□□□□□ -1.93
HDAC4P56524 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.97□□□□□ -1.93
HDAC4P56524 NIPA2P5-201ENST00000452282 464 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 AC233279.1-201ENST00000455300 423 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 RNU6-329P-201ENST00000459618 107 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.97□□□□□ -1.93
HDAC4P56524 AC113155.1-201ENST00000511141 769 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 RNU4-49P-201ENST00000516080 140 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 RNU6-875P-201ENST00000516488 106 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 Y_RNA.702-201ENST00000516843 96 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.97□□□□□ -1.93
HDAC4P56524 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HDAC4P56524 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HDAC4P56524 AC138627.2-201ENST00000624202 601 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 AL133216.2-202ENST00000634512 349 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HDAC4P56524 AC009487.2-201ENST00000420969 6821 ntBASIC2.97□□□□□ -1.93
HDAC4P56524 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.93
HDAC4P56524 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.96□□□□□ -1.93
HDAC4P56524 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.96□□□□□ -1.94
HDAC4P56524 ADAM3A-203ENST00000461344 2157 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 RNU6-1252P-201ENST00000363054 104 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 Y_RNA.100-201ENST00000363141 102 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 RNU6-254P-201ENST00000363377 107 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 Y_RNA.414-201ENST00000384011 101 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 RNU6-767P-201ENST00000384132 107 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 MIR518D-201ENST00000385014 87 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 MIR181B1-201ENST00000385240 110 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 EIF4E2P1-201ENST00000393781 255 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.96□□□□□ -1.94
HDAC4P56524 AC025750.2-201ENST00000442609 450 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 BTF3P15-201ENST00000455606 336 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 MIR4742-201ENST00000581069 85 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 UBE2V2P2-201ENST00000587677 504 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 AC023043.3-201ENST00000593113 385 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 AL670379.10-201ENST00000604330 253 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 AL670379.9-201ENST00000605428 253 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 AC123912.5-201ENST00000605470 343 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 AC104260.1-201ENST00000616660 539 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 FO624990.1-201ENST00000636373 85 ntBASIC2.96□□□□□ -1.94
HDAC4P56524 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HDAC4P56524 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.96□□□□□ -1.94
HDAC4P56524 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HDAC4P56524 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
HDAC4P56524 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
HDAC4P56524 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
HDAC4P56524 SNORD81.2-201ENST00000365153 76 ntBASIC2.95□□□□□ -1.94
HDAC4P56524 SNORA18.3-201ENST00000384122 132 ntBASIC2.95□□□□□ -1.94
HDAC4P56524 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms