Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AL353729.1-201ENST00000425044 720 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RPL21P40-201ENST00000428586 483 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 S100A11P2-201ENST00000467589 312 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RN7SL429P-201ENST00000479090 223 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RN7SL489P-201ENST00000486185 223 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RN7SL327P-201ENST00000488659 223 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RPS27AP10-201ENST00000496103 208 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 MTND4LP22-201ENST00000508209 276 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 AC116337.1-201ENST00000509680 687 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 SNORA31.1-201ENST00000515993 133 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 SNORA31.5-201ENST00000516190 133 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 APOOP3-201ENST00000536787 586 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 AL391261.3-201ENST00000557194 520 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 LINC00933-203ENST00000559812 219 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 MIR4782-201ENST00000577987 79 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 RN7SL853P-201ENST00000617250 223 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 MIR6134-201ENST00000617606 109 ntBASIC3.17□□□□□ -1.9
VPS4AQ9UN37 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
VPS4AQ9UN37 Z83843.1-201ENST00000604070 3685 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AC233263.6-201ENST00000631132 1963 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 SNORD62.1-201ENST00000362541 86 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 RNU6-1188P-201ENST00000363795 107 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 XGY1-201ENST00000381172 446 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 Y_RNA.394-201ENST00000383942 103 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 Y_RNA.419-201ENST00000384041 102 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 MIR34A-201ENST00000385130 110 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 MTCYBP4-201ENST00000401524 249 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AL356057.2-201ENST00000403318 432 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AL117339.3-201ENST00000418733 162 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 HMGN2P30-201ENST00000423237 256 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 CST9LP2-201ENST00000437612 320 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 SNORD5.1-201ENST00000458800 75 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 RPL23AP45-201ENST00000476406 468 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AC096576.1-201ENST00000489014 359 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AC104027.1-201ENST00000521887 300 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 CPDP1-201ENST00000579660 283 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AL353621.2-201ENST00000605340 133 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 MIR7106-201ENST00000612419 65 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AC010378.1-201ENST00000619270 362 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 AC073476.4-201ENST00000628409 72 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 U6.99-201ENST00000637524 83 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.16□□□□□ -1.9
VPS4AQ9UN37 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
VPS4AQ9UN37 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.15□□□□□ -1.9
VPS4AQ9UN37 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.15□□□□□ -1.9
VPS4AQ9UN37 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
VPS4AQ9UN37 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.9
VPS4AQ9UN37 CDC27P3-201ENST00000635418 1910 ntBASIC3.15□□□□□ -1.9
VPS4AQ9UN37 RNU6-37P-201ENST00000362692 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 SNORD56.3-201ENST00000363507 71 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 SNORA5B-201ENST00000363786 132 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-11P-201ENST00000364234 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.259-201ENST00000364619 101 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 Y_RNA.315-201ENST00000365117 102 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-25P-201ENST00000383873 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-1-201ENST00000383898 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-48P-201ENST00000384161 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-36P-201ENST00000384172 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-4P-201ENST00000384205 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-5P-201ENST00000384238 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-301P-201ENST00000384277 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-3P-201ENST00000384314 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-16P-201ENST00000384385 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-15P-201ENST00000384534 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-2-201ENST00000384627 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-29P-201ENST00000384637 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-1011P-201ENST00000384668 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-9-201ENST00000384776 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU6-33P-201ENST00000384793 107 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RNU1-101P-201ENST00000391171 127 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 RPL5P18-201ENST00000406671 891 ntBASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS4AQ9UN37 AC245054.2-201ENST00000415639 319 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms