Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RPS12P2-201ENST00000439728 269 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 RNU7-26P-201ENST00000458980 63 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AC080013.2-201ENST00000460866 323 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AL121769.1-201ENST00000469473 401 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AP000852.1-201ENST00000472460 573 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AL163973.1-201ENST00000484753 577 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AC090096.1-201ENST00000489168 390 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 GZMAP1-201ENST00000503054 631 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AC023141.11-201ENST00000508864 202 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 RNU6-720P-201ENST00000516363 108 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 MIR892C-201ENST00000516410 77 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 SCARNA3-201ENST00000517097 143 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 AC139792.2-201ENST00000624218 587 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 MIR1291-201ENST00000627649 87 ntBASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.62□□□□□ -1.99
CPSF3Q9UKF6 RNU6-942P-201ENST00000363002 107 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 Y_RNA.255-201ENST00000364581 97 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 U3.37-201ENST00000408528 213 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 PSPHP1-201ENST00000450062 261 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 SCARNA18-201ENST00000459004 134 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 RNU7-180P-201ENST00000459240 63 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC083798.1-201ENST00000472671 131 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 HMGB1P30-201ENST00000492455 606 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 RN7SL636P-201ENST00000497504 294 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC019235.1-201ENST00000503847 207 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC234781.5-201ENST00000508429 271 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC009646.1-201ENST00000510455 318 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC026436.1-201ENST00000510537 270 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 RNU2-69P-201ENST00000516061 100 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 RNU1-104P-201ENST00000517280 175 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 EIF1P4-201ENST00000572664 335 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AC008121.1-201ENST00000603244 268 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 HMGB1P24-202ENST00000615653 685 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.61□□□□□ -1.99
CPSF3Q9UKF6 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 Y_RNA.3-201ENST00000362331 103 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 RNU1-138P-201ENST00000384093 164 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 SNORD70.1-201ENST00000391007 85 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AC007064.1-201ENST00000412238 351 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 CALM1P1-201ENST00000442082 433 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 SNRPFP3-201ENST00000457792 225 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AP001324.2-201ENST00000461163 319 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 SRRM1P2-201ENST00000464531 1192 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 MRPL42P6-201ENST00000486397 371 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AC074344.1-201ENST00000512823 224 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 Y_RNA.687-201ENST00000516558 91 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 OR5AQ1P-201ENST00000527596 927 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AL137161.1-201ENST00000532231 390 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 BNIP3P6-201ENST00000549284 499 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AL049779.4-201ENST00000604500 156 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AC067747.1-201ENST00000608026 250 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AF250324.2-201ENST00000608299 610 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AC046143.2-201ENST00000609789 160 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 AC022418.1-201ENST00000624118 445 ntBASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.6□□□□□ -1.99
CPSF3Q9UKF6 Z82209.1-201ENST00000422141 2135 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 RNA5SP393-201ENST00000363423 117 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 RNU6-1085P-201ENST00000363576 107 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 RNU6-1322P-201ENST00000364309 107 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 Y_RNA.372-201ENST00000365599 102 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 RNU6-393P-201ENST00000384475 107 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 RNU6-748P-201ENST00000384648 107 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 RPS4XP7-201ENST00000406274 780 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 HIGD1AP2-201ENST00000446367 280 ntBASIC2.59□□□□□ -1.99
CPSF3Q9UKF6 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms