Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AL353718.1-201ENST00000451028 517 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 CYP2C59P-201ENST00000457790 269 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 RNU6-405P-201ENST00000516637 110 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 RNU6-467P-201ENST00000517027 110 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 DEFB130C-202ENST00000530001 230 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC079598.5-201ENST00000547460 117 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC233702.2-202ENST00000562547 291 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 MIR4698-201ENST00000577795 80 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC126365.2-201ENST00000580630 379 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.87□□□□□ -2.27
SCN3AQ9NY46 VN1R87P-201ENST00000596706 487 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 AL359314.1-201ENST00000616913 261 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 MTND5P9-201ENST00000503854 1755 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 ZNF680P1-201ENST00000436625 1469 ntBASIC0.87□□□□□ -2.27
SCN3AQ9NY46 ICE2P2-201ENST00000483823 2787 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC018630.2-201ENST00000534866 2403 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 Y_RNA.205-201ENST00000364128 113 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 SNORD116-20-201ENST00000384529 92 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AL603865.2-201ENST00000401679 213 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 RPL21P90-201ENST00000415692 466 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC083875.1-201ENST00000419509 405 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AL591704.2-201ENST00000421658 181 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 SNRPEP7-201ENST00000438350 220 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 KATNBL1P3-201ENST00000443475 909 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 EEF1E1P1-201ENST00000446998 430 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 RNU6-583P-201ENST00000516012 92 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC022616.8-201ENST00000533569 253 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC012065.4-201ENST00000602445 679 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AL078603.1-201ENST00000603824 313 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC099654.9-201ENST00000637055 678 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 MIR532-201ENST00000385025 91 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 TIMM9P1-201ENST00000436122 256 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 BTBD7P2-201ENST00000441962 620 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 SNRPFP3-201ENST00000457792 225 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 RNU6-965P-201ENST00000516721 96 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 CYP3A137P-201ENST00000562436 69 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 MIR4714-201ENST00000580728 77 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC092574.1-201ENST00000609771 420 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 MIR6134-201ENST00000617606 109 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 AC091948.2-201ENST00000636510 279 ntBASIC0.86□□□□□ -2.27
SCN3AQ9NY46 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.85□□□□□ -2.27
SCN3AQ9NY46 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC0.85□□□□□ -2.27
SCN3AQ9NY46 MIR30A-201ENST00000385092 71 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AL627311.1-201ENST00000431514 115 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 MTCYBP42-201ENST00000444653 1130 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 FCF1P6-201ENST00000456841 595 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 MTND1P16-201ENST00000465177 898 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.85□□□□□ -2.27
SCN3AQ9NY46 PTP4A1P4-201ENST00000512479 322 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AP003355.1-201ENST00000518956 587 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC0.85□□□□□ -2.27
SCN3AQ9NY46 PRR13P7-201ENST00000605538 430 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AC006270.3-201ENST00000605967 1036 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 MIR98-201ENST00000606724 119 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AC084824.5-201ENST00000612009 413 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 AC083806.3-201ENST00000614016 455 ntBASIC0.85□□□□□ -2.27
SCN3AQ9NY46 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.85□□□□□ -2.27
SCN3AQ9NY46 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
SCN3AQ9NY46 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
SCN3AQ9NY46 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 RNU1-133P-201ENST00000364867 167 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 BTF3L4P3-201ENST00000418879 476 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC0.84□□□□□ -2.27
SCN3AQ9NY46 AC092001.1-201ENST00000453012 261 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC0.84□□□□□ -2.27
SCN3AQ9NY46 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.84□□□□□ -2.27
SCN3AQ9NY46 RNU6-390P-201ENST00000516259 103 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 RNU6-1225P-201ENST00000516336 65 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 SNORA31.17-201ENST00000516953 127 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 COPS8P3-201ENST00000526024 482 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.84□□□□□ -2.27
SCN3AQ9NY46 AL132657.2-201ENST00000564417 358 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC0.84□□□□□ -2.27
SCN3AQ9NY46 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC0.84□□□□□ -2.27
SCN3AQ9NY46 VN1R83P-201ENST00000595685 445 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 AC068620.3-201ENST00000602749 560 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 BNIP3P9-201ENST00000603714 553 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 AL022154.1-201ENST00000604698 785 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 AC096772.1-201ENST00000609146 564 ntBASIC0.84□□□□□ -2.27
SCN3AQ9NY46 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC0.84□□□□□ -2.27
SCN3AQ9NY46 TEX21P-201ENST00000447107 1476 ntBASIC0.84□□□□□ -2.28
SCN3AQ9NY46 SNORD115-3-201ENST00000363100 82 ntBASIC0.84□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms