Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 CDC27P3-201ENST00000635418 1910 ntBASIC3.22□□□□□ -1.89
EBF3Q9H4W6 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
EBF3Q9H4W6 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 SDAD1P2-201ENST00000441308 2028 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 SNORD3E-201ENST00000362899 217 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 SNORA36C-201ENST00000384289 132 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 SNORD67-201ENST00000390833 111 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.594-201ENST00000410373 140 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC080125.1-201ENST00000414888 684 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC096644.2-201ENST00000429278 159 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC022018.1-201ENST00000430685 241 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC244505.4-201ENST00000434905 287 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 HIGD1AP11-201ENST00000438361 280 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 SSXP5-201ENST00000443473 287 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 U8.20-201ENST00000459445 131 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 VN1R104P-201ENST00000505115 1009 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC116337.1-201ENST00000509680 687 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 SNORA31.3-201ENST00000516029 96 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 RNU6-1271P-201ENST00000517049 105 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 SNORA31.20-201ENST00000517111 133 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 RNU6-264P-201ENST00000517134 104 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC087854.1-201ENST00000519706 414 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 RANP3-201ENST00000530970 276 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC113195.1-201ENST00000579952 141 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 MIR4513-201ENST00000581077 86 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 MIR4298-201ENST00000584380 73 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC009570.1-201ENST00000609599 745 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC011890.2-201ENST00000613393 294 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC133104.2-201ENST00000615272 193 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC010378.1-201ENST00000619270 362 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 MIR622-201ENST00000638396 96 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 AC118273.1-201ENST00000525324 3006 ntBASIC3.21□□□□□ -1.9
EBF3Q9H4W6 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
EBF3Q9H4W6 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.188-201ENST00000363952 111 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 RNU6-593P-201ENST00000364716 112 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 RNU6-1026P-201ENST00000384465 108 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.574-201ENST00000384766 95 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 SNORA75.6-201ENST00000391318 127 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 RNU6-1050P-201ENST00000410388 107 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 RN7SKP220-201ENST00000410611 288 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AC243428.1-201ENST00000421099 264 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AC008267.5-201ENST00000424928 265 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 NEFMP1-201ENST00000443423 1006 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AC128713.1-201ENST00000471495 306 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AC108860.1-201ENST00000484521 383 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 RNA5SP385-201ENST00000515947 110 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 RNA5SP217-201ENST00000515959 91 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 SNORA14.1-201ENST00000516113 141 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 RNA5SP384-201ENST00000516615 116 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 RN7SKP272-201ENST00000516988 232 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 MTCO3P23-201ENST00000561363 289 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 BDH2P1-201ENST00000602288 736 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AC104763.2-201ENST00000604179 382 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AC018462.2-201ENST00000605375 395 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 HSPA8P4-201ENST00000511877 1920 ntBASIC3.2□□□□□ -1.9
EBF3Q9H4W6 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.2□□□□□ -1.9
EBF3Q9H4W6 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
EBF3Q9H4W6 RNU6-600P-201ENST00000362524 99 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.80-201ENST00000362996 102 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 RNU6-715P-201ENST00000365204 103 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.399-201ENST00000383955 105 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.485-201ENST00000384395 102 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.512-201ENST00000384518 102 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 RNU6-14P-201ENST00000384630 106 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 RNU6-95P-201ENST00000384697 107 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 RNU6-817P-201ENST00000391083 104 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 Y_RNA.618-201ENST00000410949 107 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 RPLP0P7-201ENST00000416050 667 ntBASIC3.19□□□□□ -1.9
EBF3Q9H4W6 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.19□□□□□ -1.9
EBF3Q9H4W6 SNAP23P1-201ENST00000433229 246 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 162.2 ms