Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 RNY3P11-201ENST00000364153 102 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.376-201ENST00000365638 108 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.510-201ENST00000384511 114 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 MIR1289-1-201ENST00000408836 144 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 AL096701.2-201ENST00000416920 238 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 MTCO1P39-201ENST00000426148 480 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 USP9YP7-201ENST00000436723 430 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 USP9YP32-201ENST00000452432 430 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 SUMO1P2-201ENST00000452524 304 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 RNU7-169P-201ENST00000459456 61 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 AC133134.1-201ENST00000466800 359 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 FO393415.2-201ENST00000480085 343 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 MIR892C-201ENST00000516410 77 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 SNORA70.19-201ENST00000516717 90 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 RNU6-1315P-201ENST00000517187 99 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 AC022080.3-201ENST00000544433 482 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 TRAV37-201ENST00000553906 342 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 MIR2682-201ENST00000580305 110 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 UBL5P2-201ENST00000583788 219 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 AL121917.1-203ENST00000605534 577 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 AC018692.3-201ENST00000623929 123 ntBASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.32□□□□□ -1.72
USHBP1Q8N6Y0 SDAD1P2-201ENST00000441308 2028 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 RNU5A-1-201ENST00000362698 116 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 RNU6-770P-201ENST00000363929 105 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 RNU4-50P-201ENST00000364361 141 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 RNU6-512P-201ENST00000364438 103 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 U8.8-201ENST00000365399 135 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 AL591034.2-201ENST00000402839 359 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 MIR548I3-201ENST00000408378 149 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 MIR548I1-201ENST00000408810 149 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 AC126124.2-201ENST00000413542 321 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 MTCO3P19-201ENST00000415864 321 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 RPS24P6-201ENST00000452670 400 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 NDUFB4P9-201ENST00000511646 388 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 AC008885.1-201ENST00000514930 301 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 RNU1-86P-201ENST00000516108 154 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.680-201ENST00000516441 93 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 RNU1-107P-201ENST00000516617 154 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 HSPE1P20-201ENST00000538133 289 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 MIR3128-201ENST00000581957 66 ntBASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.31□□□□□ -1.72
USHBP1Q8N6Y0 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 RPL9P7-201ENST00000330965 580 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 SNORA20.1-201ENST00000364790 130 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 RNU6-395P-201ENST00000365662 106 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 RNU2-64P-201ENST00000411315 191 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AL513043.1-201ENST00000439124 535 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 FCF1P4-201ENST00000448326 183 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 RPL9P9-202ENST00000466501 579 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 SNORA40.15-201ENST00000516884 107 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AC090281.1-201ENST00000523019 276 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AL157871.3-201ENST00000557231 293 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 RPS29P30-201ENST00000600975 111 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AL365434.2-201ENST00000607979 234 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AL159153.1-201ENST00000619688 317 ntBASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USHBP1Q8N6Y0 AL356489.2-201ENST00000566968 3528 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.14-201ENST00000362415 103 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.33-201ENST00000362591 102 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.64-201ENST00000362845 102 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 RNU6-1167P-201ENST00000363227 94 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 Y_RNA.483-201ENST00000384380 101 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 SNORA51.11-201ENST00000384442 131 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 SAR1AP2-201ENST00000392696 594 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 RPL23AP48-201ENST00000406913 488 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 RPS4XP2-201ENST00000458402 793 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 RNU6-1023P-201ENST00000516137 106 ntBASIC4.29□□□□□ -1.72
USHBP1Q8N6Y0 RNA5SP471-201ENST00000516971 106 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms