Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.05□□□□□ -1.76
SF3A1Q15459 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.05□□□□□ -1.76
SF3A1Q15459 CPDP1-201ENST00000579660 283 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.05□□□□□ -1.76
SF3A1Q15459 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.05□□□□□ -1.76
SF3A1Q15459 uc_338.14-201ENST00000613162 166 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
SF3A1Q15459 SNORA50A-202ENST00000629536 136 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 AC012442.3-202ENST00000636742 206 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 AP003122.5-201ENST00000527668 3766 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC4.05□□□□□ -1.76
SF3A1Q15459 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
SF3A1Q15459 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC4.05□□□□□ -1.76
SF3A1Q15459 KPNA2P1-201ENST00000458289 1591 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 AC073544.1-201ENST00000600110 1595 ntBASIC4.05□□□□□ -1.76
SF3A1Q15459 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.05□□□□□ -1.76
SF3A1Q15459 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
SF3A1Q15459 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.04□□□□□ -1.76
SF3A1Q15459 MAPK10-362ENST00000641864 4484 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.04□□□□□ -1.76
SF3A1Q15459 SNORD9-201ENST00000362566 104 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.04□□□□□ -1.76
SF3A1Q15459 MIR7-3-201ENST00000384898 110 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 RNU6-1050P-201ENST00000410388 107 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.04□□□□□ -1.76
SF3A1Q15459 MTCO2P27-201ENST00000420740 428 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 Z98742.2-201ENST00000431564 187 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 AC236972.1-201ENST00000433225 199 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.04□□□□□ -1.76
SF3A1Q15459 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.04□□□□□ -1.76
SF3A1Q15459 AL357552.1-201ENST00000445254 415 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 AC097462.2-201ENST00000504623 481 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 AC026782.1-201ENST00000512952 449 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.04□□□□□ -1.76
SF3A1Q15459 SNORA25.11-201ENST00000515935 105 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 SNORA70.19-201ENST00000516717 90 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 APOOP3-201ENST00000536787 586 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.04□□□□□ -1.76
SF3A1Q15459 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC4.04□□□□□ -1.76
SF3A1Q15459 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC4.04□□□□□ -1.76
SF3A1Q15459 AP001836.1-201ENST00000604675 523 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 RNU6-91P-201ENST00000607774 107 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 RNU6ATAC35P-201ENST00000609276 444 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 AL669831.3-213ENST00000636676 183 ntBASIC4.04□□□□□ -1.76
SF3A1Q15459 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SF3A1Q15459 AC009541.1-201ENST00000438279 2662 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 AC058791.1-201ENST00000608412 3198 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SF3A1Q15459 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SF3A1Q15459 Y_RNA.2-201ENST00000362330 96 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 RNU6-1083P-201ENST00000384022 107 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 RNU6-622P-201ENST00000384272 103 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 U3.26-201ENST00000391236 204 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 RNA5SP390-201ENST00000410191 113 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 AP000275.1-201ENST00000411943 390 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 ATP5A1P2-201ENST00000412323 255 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 ATG3P1-201ENST00000419507 911 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 AL035423.1-201ENST00000420331 213 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 FTH1P25-201ENST00000447665 469 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 RPS3AP46-201ENST00000448352 682 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 SNORD5.1-201ENST00000458800 75 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 AC112771.1-201ENST00000463581 102 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 RN7SL594P-201ENST00000470590 287 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 RPL7P42-201ENST00000481005 679 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 RPL36AP48-201ENST00000485521 314 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 SNORA31.6-201ENST00000516241 130 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 Y_RNA.670-201ENST00000516255 105 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 RNU6-1213P-201ENST00000517075 94 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 AC093331.1-201ENST00000521474 169 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 CKS1BP7-201ENST00000522230 235 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.03□□□□□ -1.76
SF3A1Q15459 MIR5690-201ENST00000583739 73 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 AL137843.1-201ENST00000605078 385 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 MIR8076-201ENST00000611401 83 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 U4.6-201ENST00000621618 127 ntBASIC4.03□□□□□ -1.76
SF3A1Q15459 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
SF3A1Q15459 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SF3A1Q15459 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SF3A1Q15459 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SF3A1Q15459 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SF3A1Q15459 AL049781.1-201ENST00000623195 3585 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 RNU6-212P-201ENST00000362642 104 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 U3.6-201ENST00000363622 211 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 SNORD21-201ENST00000383953 95 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 SNORA75.4-201ENST00000391278 119 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.02□□□□□ -1.77
SF3A1Q15459 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.02□□□□□ -1.77
SF3A1Q15459 NOTCH2P1-201ENST00000443481 624 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 RPL39P29-201ENST00000447779 157 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.02□□□□□ -1.77
SF3A1Q15459 RPL30P15-201ENST00000457129 321 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 SNORD19B-201ENST00000459623 84 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 RPL7P49-201ENST00000471402 708 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 SEM1P1-201ENST00000506694 209 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.02□□□□□ -1.77
SF3A1Q15459 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.02□□□□□ -1.77
SF3A1Q15459 NDUFB9P3-201ENST00000521269 501 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 MIR4273-201ENST00000582824 84 ntBASIC4.02□□□□□ -1.77
SF3A1Q15459 MIR4765-201ENST00000585007 77 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 154.3 ms