Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLRN1P58418 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLRN1P58418 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLRN1P58418 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
CLRN1P58418 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.32□□□□□ -1.88
CLRN1P58418 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLRN1P58418 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLRN1P58418 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLRN1P58418 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLRN1P58418 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN1P58418 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN1P58418 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN1P58418 AL133383.2-201ENST00000622958 2336 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN1P58418 RNU6-858P-201ENST00000362436 107 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 SNORD56.1-201ENST00000362913 68 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 RNU6-1280P-201ENST00000365211 107 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 MIR628-201ENST00000385229 95 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 AL138878.1-201ENST00000405131 347 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 MTCYBP2-201ENST00000407745 171 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 RNA5SP44-201ENST00000410446 133 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.31□□□□□ -1.88
CLRN1P58418 BPY2DP-201ENST00000422208 265 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.31□□□□□ -1.88
CLRN1P58418 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.31□□□□□ -1.88
CLRN1P58418 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.31□□□□□ -1.88
CLRN1P58418 CYCSP32-201ENST00000440548 321 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.31□□□□□ -1.88
CLRN1P58418 snoU13.28-201ENST00000459235 104 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 MRPL42P6-201ENST00000486397 371 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.31□□□□□ -1.88
CLRN1P58418 RNU6-581P-201ENST00000516214 105 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 AC007458.1-201ENST00000542812 373 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.31□□□□□ -1.88
CLRN1P58418 MIR5685-201ENST00000579080 79 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 AC024220.1-201ENST00000603675 484 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.31□□□□□ -1.88
CLRN1P58418 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.31□□□□□ -1.88
CLRN1P58418 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
CLRN1P58418 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
CLRN1P58418 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.31□□□□□ -1.88
CLRN1P58418 AL021368.2-201ENST00000606125 5352 ntBASIC3.31□□□□□ -1.88
CLRN1P58418 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN1P58418 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLRN1P58418 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.3□□□□□ -1.88
CLRN1P58418 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
CLRN1P58418 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CLRN1P58418 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.3□□□□□ -1.88
CLRN1P58418 AL353746.1-201ENST00000566293 6881 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 Y_RNA.526-201ENST00000384572 110 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 MIR190B-201ENST00000401119 79 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 RNU6-1245P-201ENST00000411130 106 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 MTCO3P19-201ENST00000415864 321 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC074117.2-201ENST00000417130 397 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC017083.1-201ENST00000428093 483 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.3□□□□□ -1.88
CLRN1P58418 DYNLT3P2-201ENST00000442517 295 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.3□□□□□ -1.88
CLRN1P58418 AC073910.1-201ENST00000445047 438 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 OSTCP8-201ENST00000445117 448 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AL590664.1-201ENST00000448065 339 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 HMGN2P10-201ENST00000448085 265 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AL513124.1-201ENST00000450410 614 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.3□□□□□ -1.88
CLRN1P58418 CEACAMP4-201ENST00000457676 421 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.3□□□□□ -1.88
CLRN1P58418 SCARNA14-201ENST00000516903 136 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC009812.2-201ENST00000517657 457 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC008011.1-201ENST00000545989 227 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 CR383656.8-201ENST00000549046 145 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC021739.1-201ENST00000559631 174 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.3□□□□□ -1.88
CLRN1P58418 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.3□□□□□ -1.88
CLRN1P58418 AC104581.2-201ENST00000572227 430 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC087499.8-201ENST00000578406 226 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 RN7SL703P-201ENST00000578485 302 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLRN1P58418 MIR6076-201ENST00000617521 113 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 AC068724.3-201ENST00000625906 87 ntBASIC3.3□□□□□ -1.88
CLRN1P58418 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.3□□□□□ -1.88
CLRN1P58418 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLRN1P58418 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
CLRN1P58418 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.29□□□□□ -1.88
CLRN1P58418 AC110491.1-201ENST00000562191 2010 ntBASIC3.29□□□□□ -1.88
CLRN1P58418 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.29□□□□□ -1.88
CLRN1P58418 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CLRN1P58418 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLRN1P58418 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLRN1P58418 RNU4-50P-201ENST00000364361 141 ntBASIC3.29□□□□□ -1.88
CLRN1P58418 SNORA63.7-201ENST00000365579 123 ntBASIC3.29□□□□□ -1.88
CLRN1P58418 Y_RNA.551-201ENST00000384661 102 ntBASIC3.29□□□□□ -1.88
CLRN1P58418 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CLRN1P58418 RPL21P1-201ENST00000399532 476 ntBASIC3.29□□□□□ -1.88
CLRN1P58418 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CLRN1P58418 RN7SKP156-201ENST00000410308 342 ntBASIC3.29□□□□□ -1.88
CLRN1P58418 RPL23AP82-202ENST00000427528 469 ntBASIC3.29□□□□□ -1.88
CLRN1P58418 AC005300.1-201ENST00000428401 373 ntBASIC3.29□□□□□ -1.88
CLRN1P58418 Z82188.1-201ENST00000436709 154 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms