Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.96□□□□□ -1.94
SHMT1P34896 RNU6-189P-201ENST00000516120 101 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 RNU1-41P-201ENST00000516161 162 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 RNU1-48P-201ENST00000516400 162 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 RNU6-1038P-201ENST00000516516 104 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 RNU6-1183P-201ENST00000517054 60 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.96□□□□□ -1.94
SHMT1P34896 LINC00933-203ENST00000559812 219 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.96□□□□□ -1.94
SHMT1P34896 LRRC37A5P-203ENST00000580181 585 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 AC060780.3-201ENST00000589464 80 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.96□□□□□ -1.94
SHMT1P34896 AC116312.1-201ENST00000606841 314 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 AC092807.2-201ENST00000609367 243 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 RMST_4.1-201ENST00000616886 107 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 AC006504.8-201ENST00000621046 635 ntBASIC2.96□□□□□ -1.94
SHMT1P34896 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
SHMT1P34896 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.96□□□□□ -1.94
SHMT1P34896 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.96□□□□□ -1.94
SHMT1P34896 RNU1-100P-201ENST00000365255 165 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 Y_RNA.378-201ENST00000365652 113 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 AC009161.1-201ENST00000417306 376 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 BPY2DP-201ENST00000422208 265 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 HMGB1P31-201ENST00000437242 427 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 AC098831.1-201ENST00000440661 216 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.95□□□□□ -1.94
SHMT1P34896 HMGN2P26-201ENST00000463169 339 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 DYNLL1P5-201ENST00000467158 270 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 MTCYBP18-201ENST00000501056 747 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 AC008549.1-201ENST00000512900 643 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.95□□□□□ -1.94
SHMT1P34896 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.95□□□□□ -1.94
SHMT1P34896 AL118558.2-201ENST00000556294 238 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 SNORD53-201ENST00000579969 78 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 HMGN2P15-201ENST00000585707 270 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 AC092747.3-201ENST00000603769 301 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 AC103705.1-201ENST00000619013 241 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.95□□□□□ -1.94
SHMT1P34896 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.95□□□□□ -1.94
SHMT1P34896 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.95□□□□□ -1.94
SHMT1P34896 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
SHMT1P34896 AC110491.1-201ENST00000562191 2010 ntBASIC2.95□□□□□ -1.94
SHMT1P34896 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
SHMT1P34896 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
SHMT1P34896 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT1P34896 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SHMT1P34896 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.94□□□□□ -1.94
SHMT1P34896 SNORD3E-201ENST00000362899 217 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 Y_RNA.100-201ENST00000363141 102 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 SNORD14B-201ENST00000364533 90 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 RNA5SP219-201ENST00000390940 113 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 RNU2-3P-201ENST00000410144 191 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 Y_RNA.615-201ENST00000410769 117 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT1P34896 OOSP1P1-201ENST00000423265 274 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.94□□□□□ -1.94
SHMT1P34896 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT1P34896 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT1P34896 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT1P34896 AC011005.2-201ENST00000487324 359 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 AC116353.2-201ENST00000505332 712 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 RNU1-86P-201ENST00000516108 154 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 RNU1-107P-201ENST00000516617 154 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 CKS1BP7-201ENST00000522230 235 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT1P34896 CYCSP27-201ENST00000527643 293 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 AC090115.3-201ENST00000553218 849 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 AC007336.1-201ENST00000576365 3828 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.94□□□□□ -1.94
SHMT1P34896 VN1R80P-201ENST00000597126 338 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 BNIP3P10-201ENST00000605360 577 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 AC087045.1-201ENST00000605856 382 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.94□□□□□ -1.94
SHMT1P34896 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT1P34896 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.94□□□□□ -1.94
SHMT1P34896 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SHMT1P34896 AC121333.1-201ENST00000567488 2709 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SHMT1P34896 CASC19-280ENST00000642102 1351 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SHMT1P34896 RNU6-799P-201ENST00000363567 107 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 RNU6-522P-201ENST00000364497 107 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 AL359511.1-201ENST00000402970 211 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 SNORA3.2-201ENST00000408221 125 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 CYCSP33-201ENST00000414485 327 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.93□□□□□ -1.94
SHMT1P34896 RPL30P16-201ENST00000419341 429 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.93□□□□□ -1.94
SHMT1P34896 TOMM20P4-201ENST00000427861 435 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 AC007547.1-201ENST00000462177 490 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 RN7SL297P-201ENST00000483161 293 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.93□□□□□ -1.94
SHMT1P34896 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.93□□□□□ -1.94
SHMT1P34896 AC100810.6-201ENST00000638068 285 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 AC099654.14-201ENST00000638599 341 ntBASIC2.93□□□□□ -1.94
SHMT1P34896 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.93□□□□□ -1.94
SHMT1P34896 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.92□□□□□ -1.94
SHMT1P34896 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms