Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 RN7SKP258-201ENST00000517151 304 ntBASIC0.68□□□□□ -2.3
SDC4P31431 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.68□□□□□ -2.3
SDC4P31431 ZKSCAN7P1-201ENST00000543668 673 ntBASIC0.68□□□□□ -2.3
SDC4P31431 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.68□□□□□ -2.3
SDC4P31431 AC133485.1-201ENST00000567176 124 ntBASIC0.68□□□□□ -2.3
SDC4P31431 AC138907.6-201ENST00000568401 126 ntBASIC0.68□□□□□ -2.3
SDC4P31431 MIR3169-201ENST00000578032 83 ntBASIC0.68□□□□□ -2.3
SDC4P31431 AC012065.4-201ENST00000602445 679 ntBASIC0.68□□□□□ -2.3
SDC4P31431 DPPA3P3-201ENST00000603842 430 ntBASIC0.68□□□□□ -2.3
SDC4P31431 AC112220.3-201ENST00000605502 502 ntBASIC0.68□□□□□ -2.3
SDC4P31431 AC090970.3-201ENST00000612566 866 ntBASIC0.68□□□□□ -2.3
SDC4P31431 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.68□□□□□ -2.3
SDC4P31431 AC027335.2-201ENST00000624030 375 ntBASIC0.68□□□□□ -2.3
SDC4P31431 AC009541.1-201ENST00000438279 2662 ntBASIC0.67□□□□□ -2.3
SDC4P31431 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.67□□□□□ -2.3
SDC4P31431 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
SDC4P31431 RNU6-1065P-201ENST00000384513 106 ntBASIC0.67□□□□□ -2.3
SDC4P31431 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC0.67□□□□□ -2.3
SDC4P31431 AC006461.1-201ENST00000412637 326 ntBASIC0.67□□□□□ -2.3
SDC4P31431 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.67□□□□□ -2.3
SDC4P31431 AL589872.1-201ENST00000426602 288 ntBASIC0.67□□□□□ -2.3
SDC4P31431 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.67□□□□□ -2.3
SDC4P31431 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC0.67□□□□□ -2.3
SDC4P31431 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC0.67□□□□□ -2.3
SDC4P31431 PSMC1P5-201ENST00000512850 177 ntBASIC0.67□□□□□ -2.3
SDC4P31431 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC0.67□□□□□ -2.3
SDC4P31431 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC0.67□□□□□ -2.3
SDC4P31431 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.67□□□□□ -2.3
SDC4P31431 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC0.67□□□□□ -2.3
SDC4P31431 AL445264.1-201ENST00000621719 171 ntBASIC0.67□□□□□ -2.3
SDC4P31431 AC009269.6-201ENST00000621778 588 ntBASIC0.67□□□□□ -2.3
SDC4P31431 AC093648.1-201ENST00000623546 606 ntBASIC0.67□□□□□ -2.3
SDC4P31431 RNA5SP493-201ENST00000364115 91 ntBASIC0.66□□□□□ -2.3
SDC4P31431 MIR499A-201ENST00000384903 122 ntBASIC0.66□□□□□ -2.3
SDC4P31431 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
SDC4P31431 RNU6-360P-201ENST00000390944 104 ntBASIC0.66□□□□□ -2.3
SDC4P31431 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.66□□□□□ -2.3
SDC4P31431 TPMTP2-201ENST00000414372 726 ntBASIC0.66□□□□□ -2.3
SDC4P31431 AC009518.2-201ENST00000418056 731 ntBASIC0.66□□□□□ -2.3
SDC4P31431 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.66□□□□□ -2.3
SDC4P31431 AC093259.1-201ENST00000509755 300 ntBASIC0.66□□□□□ -2.3
SDC4P31431 RNU6-390P-201ENST00000516259 103 ntBASIC0.66□□□□□ -2.3
SDC4P31431 BX284668.6-201ENST00000606899 438 ntBASIC0.66□□□□□ -2.3
SDC4P31431 uc_338.15-201ENST00000615470 191 ntBASIC0.66□□□□□ -2.3
SDC4P31431 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.66□□□□□ -2.3
SDC4P31431 HSBP1P2-201ENST00000299671 229 ntBASIC0.65□□□□□ -2.31
SDC4P31431 RNU6-288P-201ENST00000363690 104 ntBASIC0.65□□□□□ -2.31
SDC4P31431 RNU6-296P-201ENST00000384608 107 ntBASIC0.65□□□□□ -2.31
SDC4P31431 RNU6-114P-201ENST00000384704 105 ntBASIC0.65□□□□□ -2.31
SDC4P31431 RNU2-64P-201ENST00000411315 191 ntBASIC0.65□□□□□ -2.31
SDC4P31431 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.65□□□□□ -2.31
SDC4P31431 AC138623.1-201ENST00000418060 216 ntBASIC0.65□□□□□ -2.31
SDC4P31431 OR2AQ1P-201ENST00000451972 200 ntBASIC0.65□□□□□ -2.31
SDC4P31431 BTF3P15-201ENST00000455606 336 ntBASIC0.65□□□□□ -2.31
SDC4P31431 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.65□□□□□ -2.31
SDC4P31431 AC093809.1-201ENST00000509155 340 ntBASIC0.65□□□□□ -2.31
SDC4P31431 RNU6-965P-201ENST00000516721 96 ntBASIC0.65□□□□□ -2.31
SDC4P31431 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.65□□□□□ -2.31
SDC4P31431 AC004812.1-201ENST00000540773 146 ntBASIC0.65□□□□□ -2.31
SDC4P31431 ZNF971P-201ENST00000562068 1249 ntBASIC0.65□□□□□ -2.31
SDC4P31431 AC138915.2-201ENST00000569776 97 ntBASIC0.65□□□□□ -2.31
SDC4P31431 AL353997.4-201ENST00000586196 166 ntBASIC0.65□□□□□ -2.31
SDC4P31431 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC0.65□□□□□ -2.31
SDC4P31431 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.65□□□□□ -2.31
SDC4P31431 AC092447.10-201ENST00000620607 1652 ntBASIC0.65□□□□□ -2.31
SDC4P31431 SNORA4.1-201ENST00000364263 144 ntBASIC0.64□□□□□ -2.31
SDC4P31431 RNU6-512P-201ENST00000364438 103 ntBASIC0.64□□□□□ -2.31
SDC4P31431 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.64□□□□□ -2.31
SDC4P31431 RNU6-481P-201ENST00000384194 107 ntBASIC0.64□□□□□ -2.31
SDC4P31431 SNORA25-201ENST00000384384 134 ntBASIC0.64□□□□□ -2.31
SDC4P31431 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
SDC4P31431 MRPL35P1-201ENST00000404272 572 ntBASIC0.64□□□□□ -2.31
SDC4P31431 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.64□□□□□ -2.31
SDC4P31431 C8orf59P1-201ENST00000429930 303 ntBASIC0.64□□□□□ -2.31
SDC4P31431 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.64□□□□□ -2.31
SDC4P31431 MTND2P4-201ENST00000445034 1004 ntBASIC0.64□□□□□ -2.31
SDC4P31431 AC145146.1-201ENST00000496370 254 ntBASIC0.64□□□□□ -2.31
SDC4P31431 UTP23-205ENST00000520733 369 ntTSL 3 BASIC0.64□□□□□ -2.31
SDC4P31431 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.64□□□□□ -2.31
SDC4P31431 AC021171.1-201ENST00000603137 706 ntBASIC0.64□□□□□ -2.31
SDC4P31431 AL450270.1-201ENST00000606160 391 ntBASIC0.64□□□□□ -2.31
SDC4P31431 AL022345.2-201ENST00000606307 135 ntBASIC0.64□□□□□ -2.31
SDC4P31431 AC093788.1-201ENST00000609356 927 ntBASIC0.64□□□□□ -2.31
SDC4P31431 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.64□□□□□ -2.31
SDC4P31431 AC010975.3-201ENST00000618727 978 ntBASIC0.64□□□□□ -2.31
SDC4P31431 MIR6788-201ENST00000618842 66 ntBASIC0.64□□□□□ -2.31
SDC4P31431 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.64□□□□□ -2.31
SDC4P31431 AC130454.1-201ENST00000622948 401 ntBASIC0.64□□□□□ -2.31
SDC4P31431 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.64□□□□□ -2.31
SDC4P31431 AC095038.3-201ENST00000634439 195 ntBASIC0.64□□□□□ -2.31
SDC4P31431 AC068205.3-201ENST00000636385 468 ntBASIC0.64□□□□□ -2.31
SDC4P31431 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
SDC4P31431 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.63□□□□□ -2.31
SDC4P31431 RNU6-743P-201ENST00000364151 106 ntBASIC0.63□□□□□ -2.31
SDC4P31431 RNU6-898P-201ENST00000365627 104 ntBASIC0.63□□□□□ -2.31
SDC4P31431 MIR29B2-201ENST00000385055 81 ntBASIC0.63□□□□□ -2.31
SDC4P31431 MIR548J-201ENST00000408833 112 ntBASIC0.63□□□□□ -2.31
SDC4P31431 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.63□□□□□ -2.31
SDC4P31431 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.63□□□□□ -2.31
SDC4P31431 GXYLT1P1-201ENST00000446657 490 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 143.1 ms