Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC004908.2-201ENST00000609090 574 ntBASIC1.37□□□□□ -2.19
COL5A3P25940 AC008443.7-201ENST00000622195 246 ntBASIC1.37□□□□□ -2.19
COL5A3P25940 AC120349.3-201ENST00000624377 529 ntBASIC1.37□□□□□ -2.19
COL5A3P25940 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
COL5A3P25940 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.37□□□□□ -2.19
COL5A3P25940 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
COL5A3P25940 MTND4P27-201ENST00000450813 1354 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AL138713.1-201ENST00000624026 2130 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 RNU5E-8P-201ENST00000363502 116 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 RNA5SP457-201ENST00000363657 124 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 RNU6-853P-201ENST00000364306 107 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 RNU6-660P-201ENST00000364566 109 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 MT-TH-201ENST00000387441 69 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.36□□□□□ -2.19
COL5A3P25940 AL353777.1-201ENST00000425552 326 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 MTATP6P17-201ENST00000431030 672 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 FTH1P12-201ENST00000432137 551 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.36□□□□□ -2.19
COL5A3P25940 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC1.36□□□□□ -2.19
COL5A3P25940 AL714022.1-201ENST00000439897 151 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.36□□□□□ -2.19
COL5A3P25940 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC1.36□□□□□ -2.19
COL5A3P25940 AC087588.1-201ENST00000462203 316 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AC116337.2-201ENST00000477662 156 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.36□□□□□ -2.19
COL5A3P25940 RNU6-201P-201ENST00000517100 61 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AC107934.1-201ENST00000522215 217 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC1.36□□□□□ -2.19
COL5A3P25940 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.36□□□□□ -2.19
COL5A3P25940 CR383656.8-201ENST00000549046 145 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 UBE2L4-201ENST00000587688 464 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 MTND4LP5-201ENST00000605152 292 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AC004852.3-201ENST00000614131 326 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AC022079.1-201ENST00000621546 602 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 AL589743.1-201ENST00000551932 2712 ntBASIC1.36□□□□□ -2.19
COL5A3P25940 SDAD1P2-201ENST00000441308 2028 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.35□□□□□ -2.19
COL5A3P25940 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
COL5A3P25940 RNU6-501P-201ENST00000364072 100 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 SNORD116-8-201ENST00000384365 95 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 MIR19A-201ENST00000384878 82 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 SNORD56-201ENST00000413522 71 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 UBE2FP1-201ENST00000416536 447 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 RPS27AP14-201ENST00000422868 454 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 PPP1R11P2-201ENST00000423543 382 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.35□□□□□ -2.19
COL5A3P25940 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.35□□□□□ -2.19
COL5A3P25940 AL049734.2-201ENST00000441066 616 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 MTND2P24-201ENST00000453434 806 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC1.35□□□□□ -2.19
COL5A3P25940 AL033528.1-201ENST00000453780 140 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC104563.1-201ENST00000476147 376 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC021382.1-201ENST00000483523 359 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 NDUFB4P2-201ENST00000509515 391 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 Y_RNA.688-201ENST00000516565 95 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.35□□□□□ -2.19
COL5A3P25940 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1.35□□□□□ -2.19
COL5A3P25940 SUB1P4-201ENST00000566062 339 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 MIR5697-201ENST00000578045 78 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 MIR4714-201ENST00000580728 77 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 MIR3118-1-201ENST00000581787 76 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 MIR4307-201ENST00000582802 84 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 MIR3117-201ENST00000584034 78 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC010620.1-201ENST00000601088 1102 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 CLPTM1LP1-201ENST00000604519 484 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
COL5A3P25940 AC121334.2-201ENST00000605387 271 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 RNU6-87P-201ENST00000607561 108 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC007038.2-201ENST00000608095 740 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AL627230.6-201ENST00000611129 280 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC010133.1-201ENST00000615809 842 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC090132.2-201ENST00000615881 347 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC009878.1-201ENST00000621819 340 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC092125.1-201ENST00000562568 1995 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 CR848007.1-201ENST00000442354 1699 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
COL5A3P25940 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 RNU6-288P-201ENST00000363690 104 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 RNY3P13-201ENST00000365542 102 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 SNORD115.1-201ENST00000391109 76 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC1.35□□□□□ -2.19
COL5A3P25940 AC098614.2-201ENST00000426040 255 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AL589872.1-201ENST00000426602 288 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 CETN4P-201ENST00000432407 469 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AP000542.1-201ENST00000448473 371 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 EPS15P1-201ENST00000448836 336 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.35□□□□□ -2.19
COL5A3P25940 ZNF736P5Y-201ENST00000451173 805 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.35□□□□□ -2.19
COL5A3P25940 AC093534.1-201ENST00000504977 132 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 SNORA31.18-201ENST00000517043 134 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 RNU6-232P-201ENST00000517144 64 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 MTND4LP18-201ENST00000526864 291 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.35□□□□□ -2.19
COL5A3P25940 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC1.35□□□□□ -2.19
COL5A3P25940 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.35□□□□□ -2.19
COL5A3P25940 AC123904.2-201ENST00000548059 300 ntBASIC1.35□□□□□ -2.19
COL5A3P25940 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC1.35□□□□□ -2.19
COL5A3P25940 MIR3146-201ENST00000580367 79 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms