Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH3P20585 AC008628.2-201ENST00000502605 298 ntBASIC2.69□□□□□ -1.98
MSH3P20585 SNORA14.1-201ENST00000516113 141 ntBASIC2.69□□□□□ -1.98
MSH3P20585 RNU1-103P-201ENST00000516502 125 ntBASIC2.69□□□□□ -1.98
MSH3P20585 RNU6-572P-201ENST00000516724 80 ntBASIC2.69□□□□□ -1.98
MSH3P20585 Y_RNA.702-201ENST00000516843 96 ntBASIC2.69□□□□□ -1.98
MSH3P20585 SNORA25.17-201ENST00000517184 124 ntBASIC2.69□□□□□ -1.98
MSH3P20585 BTF3P12-201ENST00000519620 469 ntBASIC2.69□□□□□ -1.98
MSH3P20585 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH3P20585 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH3P20585 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH3P20585 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.69□□□□□ -1.98
MSH3P20585 AC011471.1-201ENST00000585766 187 ntBASIC2.69□□□□□ -1.98
MSH3P20585 UBE2V2P2-201ENST00000587677 504 ntBASIC2.69□□□□□ -1.98
MSH3P20585 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.69□□□□□ -1.98
MSH3P20585 ATP1B3P1-201ENST00000605365 821 ntBASIC2.69□□□□□ -1.98
MSH3P20585 AC021646.1-201ENST00000605469 484 ntBASIC2.69□□□□□ -1.98
MSH3P20585 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSH3P20585 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
MSH3P20585 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
MSH3P20585 AC138915.1-201ENST00000565427 1685 ntBASIC2.69□□□□□ -1.98
MSH3P20585 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
MSH3P20585 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.68□□□□□ -1.98
MSH3P20585 RNU5E-4P-201ENST00000364931 120 ntBASIC2.68□□□□□ -1.98
MSH3P20585 SNORD21-201ENST00000383953 95 ntBASIC2.68□□□□□ -1.98
MSH3P20585 RNU1-73P-201ENST00000383971 164 ntBASIC2.68□□□□□ -1.98
MSH3P20585 SNORA32.2-201ENST00000384049 122 ntBASIC2.68□□□□□ -1.98
MSH3P20585 Y_RNA.480-201ENST00000384364 102 ntBASIC2.68□□□□□ -1.98
MSH3P20585 RNU6-510P-201ENST00000391239 108 ntBASIC2.68□□□□□ -1.98
MSH3P20585 Y_RNA.623-201ENST00000411128 95 ntBASIC2.68□□□□□ -1.98
MSH3P20585 HMGN2P35-201ENST00000412164 270 ntBASIC2.68□□□□□ -1.98
MSH3P20585 RPL26P27-201ENST00000414397 437 ntBASIC2.68□□□□□ -1.98
MSH3P20585 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.68□□□□□ -1.98
MSH3P20585 HMGN2P30-201ENST00000423237 256 ntBASIC2.68□□□□□ -1.98
MSH3P20585 MTATP6P7-201ENST00000453315 681 ntBASIC2.68□□□□□ -1.98
MSH3P20585 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.68□□□□□ -1.98
MSH3P20585 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.68□□□□□ -1.98
MSH3P20585 AC092798.1-201ENST00000458542 409 ntBASIC2.68□□□□□ -1.98
MSH3P20585 AC087884.1-201ENST00000469738 328 ntBASIC2.68□□□□□ -1.98
MSH3P20585 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.68□□□□□ -1.98
MSH3P20585 TBCAP3-201ENST00000512475 312 ntBASIC2.68□□□□□ -1.98
MSH3P20585 AC046134.1-201ENST00000514454 666 ntBASIC2.68□□□□□ -1.98
MSH3P20585 MIR892C-201ENST00000516410 77 ntBASIC2.68□□□□□ -1.98
MSH3P20585 RN7SKP256-201ENST00000517201 314 ntBASIC2.68□□□□□ -1.98
MSH3P20585 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.68□□□□□ -1.98
MSH3P20585 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.68□□□□□ -1.98
MSH3P20585 CYCSP27-201ENST00000527643 293 ntBASIC2.68□□□□□ -1.98
MSH3P20585 AC079600.2-201ENST00000550076 130 ntBASIC2.68□□□□□ -1.98
MSH3P20585 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.68□□□□□ -1.98
MSH3P20585 AL391261.3-201ENST00000557194 520 ntBASIC2.68□□□□□ -1.98
MSH3P20585 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.68□□□□□ -1.98
MSH3P20585 AL355598.1-201ENST00000604169 202 ntBASIC2.68□□□□□ -1.98
MSH3P20585 AC002044.1-201ENST00000606707 158 ntBASIC2.68□□□□□ -1.98
MSH3P20585 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.68□□□□□ -1.98
MSH3P20585 AC110079.1-202ENST00000635213 138 ntBASIC2.68□□□□□ -1.98
MSH3P20585 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.68□□□□□ -1.98
MSH3P20585 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.68□□□□□ -1.98
MSH3P20585 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.68□□□□□ -1.98
MSH3P20585 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
MSH3P20585 VTRNA1-1-201ENST00000363120 99 ntBASIC2.67□□□□□ -1.98
MSH3P20585 RNU6-254P-201ENST00000363377 107 ntBASIC2.67□□□□□ -1.98
MSH3P20585 RNU6-266P-201ENST00000364225 107 ntBASIC2.67□□□□□ -1.98
MSH3P20585 SNORD14B-201ENST00000364533 90 ntBASIC2.67□□□□□ -1.98
MSH3P20585 Z98749.2-208ENST00000381646 500 ntBASIC2.67□□□□□ -1.98
MSH3P20585 MIR9-1-201ENST00000385198 89 ntBASIC2.67□□□□□ -1.98
MSH3P20585 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
MSH3P20585 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.67□□□□□ -1.98
MSH3P20585 AL365496.1-201ENST00000426885 215 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC007560.1-201ENST00000426912 237 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AL627311.1-201ENST00000431514 115 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC112220.1-201ENST00000434628 355 ntBASIC2.67□□□□□ -1.98
MSH3P20585 NDUFA5P4-201ENST00000436704 385 ntBASIC2.67□□□□□ -1.98
MSH3P20585 IFNA20P-201ENST00000436840 528 ntBASIC2.67□□□□□ -1.98
MSH3P20585 USP9YP8-201ENST00000441913 500 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AL078601.1-201ENST00000444542 271 ntBASIC2.67□□□□□ -1.98
MSH3P20585 RPL7P12-201ENST00000446719 750 ntBASIC2.67□□□□□ -1.98
MSH3P20585 RNU6-329P-201ENST00000459618 107 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC117503.1-201ENST00000472241 394 ntBASIC2.67□□□□□ -1.98
MSH3P20585 RPS27AP10-201ENST00000496103 208 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC091951.2-201ENST00000500762 203 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.67□□□□□ -1.98
MSH3P20585 AC079140.5-201ENST00000507882 310 ntBASIC2.67□□□□□ -1.98
MSH3P20585 RNU6-507P-201ENST00000516045 100 ntBASIC2.67□□□□□ -1.98
MSH3P20585 RNU4-49P-201ENST00000516080 140 ntBASIC2.67□□□□□ -1.98
MSH3P20585 RNU6-1069P-201ENST00000516612 133 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.67□□□□□ -1.98
MSH3P20585 AC087241.2-201ENST00000535801 324 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.67□□□□□ -1.98
MSH3P20585 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.67□□□□□ -1.98
MSH3P20585 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.67□□□□□ -1.98
MSH3P20585 RPL23AP78-201ENST00000599928 470 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AP000787.2-201ENST00000604432 568 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AL137843.1-201ENST00000605078 385 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC019159.1-201ENST00000605094 187 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AL033523.1-201ENST00000605153 153 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AL121757.2-201ENST00000611223 313 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC093913.1-201ENST00000614178 329 ntBASIC2.67□□□□□ -1.98
MSH3P20585 AC104260.1-201ENST00000616660 539 ntBASIC2.67□□□□□ -1.98
MSH3P20585 U6.99-201ENST00000637524 83 ntBASIC2.67□□□□□ -1.98
MSH3P20585 Y_RNA.70-201ENST00000362886 110 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms