| HLA-DPA1 | P20036 | AC008549.1-201 | ENST00000512900 | 643 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | SNORA31.11-201 | ENST00000516528 | 139 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | AP002453.2-201 | ENST00000533503 | 320 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | SNRPGP18-201 | ENST00000553000 | 214 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | MIR4287-201 | ENST00000579398 | 78 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | AC073539.2-201 | ENST00000597113 | 165 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | SNRPGP17-201 | ENST00000603780 | 214 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | MIR98-201 | ENST00000606724 | 119 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | RMST_4.1-201 | ENST00000616886 | 107 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | AL603755.1-201 | ENST00000619504 | 163 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | CYSLTR1-203 | ENST00000614798 | 2681 nt | APPRIS P1 TSL 1 (best) BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | SNX16-212 | ENST00000615066 | 1918 nt | TSL 5 BASIC | 2.23 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | OSTN-201 | ENST00000339051 | 402 nt | APPRIS P1 TSL 1 (best) BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | RNU4-21P-201 | ENST00000362802 | 126 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | RNU6-1287P-201 | ENST00000362914 | 107 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | RNU6-1060P-201 | ENST00000384664 | 107 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | TRDJ2-201 | ENST00000390475 | 54 nt | APPRIS P1 BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | SNORA40.19-201 | ENST00000390846 | 128 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | CBX3P9-201 | ENST00000402326 | 552 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | SNORA3.2-201 | ENST00000408221 | 125 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | RNU2-32P-201 | ENST00000411193 | 191 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | AC004543.1-201 | ENST00000418764 | 369 nt | TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | AL162400.2-201 | ENST00000427547 | 157 nt | TSL 3 BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | AL592309.2-201 | ENST00000444647 | 607 nt | TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | SATB1-AS1-204 | ENST00000453361 | 726 nt | TSL 3 BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | MAGI1-AS1-201 | ENST00000472514 | 591 nt | TSL 3 BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | AP000763.2-201 | ENST00000540641 | 163 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | PRELID2P1-201 | ENST00000552837 | 301 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | CCDC30-201 | ENST00000340612 | 2664 nt | APPRIS P2 TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | RMDN2-203 | ENST00000402091 | 1973 nt | TSL 2 BASIC | 2.21 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | ZNF702P-202 | ENST00000434269 | 1966 nt | BASIC | 2.21 | □□□□□ -2.05 | | |
| HLA-DPA1 | P20036 | IL2-201 | ENST00000226730 | 1029 nt | APPRIS P1 TSL 1 (best) BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | OR6C76-201 | ENST00000328314 | 939 nt | APPRIS P1 BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNA5SP276-201 | ENST00000362580 | 94 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNU6-78P-201 | ENST00000362897 | 107 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | SNORA62.1-201 | ENST00000364287 | 154 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNU5E-7P-201 | ENST00000365290 | 117 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNU6-546P-201 | ENST00000383991 | 107 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | MIR518A2-201 | ENST00000384966 | 87 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | BTF3L4P1-201 | ENST00000413813 | 468 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC104462.1-201 | ENST00000414565 | 447 nt | TSL 2 BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AL356134.1-201 | ENST00000419815 | 373 nt | TSL 3 BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AL356320.1-201 | ENST00000429616 | 163 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RPL31P35-201 | ENST00000431058 | 377 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | snoU13.14-201 | ENST00000459372 | 104 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC006512.1-201 | ENST00000468816 | 291 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RN7SL429P-201 | ENST00000479090 | 223 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RN7SL489P-201 | ENST00000486185 | 223 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RN7SL327P-201 | ENST00000488659 | 223 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC097467.3-213 | ENST00000508191 | 726 nt | TSL 3 BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AP003392.2-201 | ENST00000527269 | 208 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AP001363.1-201 | ENST00000544108 | 264 nt | TSL 3 BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | MALAT1-207 | ENST00000613376 | 132 nt | TSL 3 BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RN7SL853P-201 | ENST00000617250 | 223 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | MIR6873-201 | ENST00000622788 | 63 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC011155.2-201 | ENST00000623202 | 216 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | XRCC4-205 | ENST00000511817 | 1636 nt | APPRIS P4 TSL 1 (best) BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC002543.1-201 | ENST00000299783 | 1954 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | C20orf187-201 | ENST00000378252 | 446 nt | TSL 2 BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNU6-45P-201 | ENST00000384471 | 107 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNY3P10-201 | ENST00000384764 | 102 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNU6-550P-201 | ENST00000391057 | 101 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | SNORA46.1-201 | ENST00000391069 | 153 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNA5SP425-201 | ENST00000410336 | 112 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNU6-607P-201 | ENST00000411283 | 108 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | LINC01312-201 | ENST00000412745 | 775 nt | TSL 3 BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC003985.1-201 | ENST00000414127 | 362 nt | TSL 3 BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | Z98742.3-201 | ENST00000418637 | 326 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC096920.1-201 | ENST00000423991 | 241 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | DNAJC19P4-201 | ENST00000440115 | 345 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AL022238.1-201 | ENST00000442557 | 355 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AL353705.4-201 | ENST00000449661 | 238 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | PMCHL2-203 | ENST00000457791 | 237 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | SMAD1-AS2-201 | ENST00000508936 | 1090 nt | TSL 1 (best) BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC074344.1-201 | ENST00000512823 | 224 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | SCARNA16.3-201 | ENST00000516595 | 184 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC090796.1-201 | ENST00000520370 | 567 nt | TSL 4 BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | CYCSP27-201 | ENST00000527643 | 293 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC090124.2-201 | ENST00000527727 | 563 nt | TSL 4 BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | LRRC34P1-201 | ENST00000542742 | 915 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC026464.5-201 | ENST00000562497 | 722 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | LINC01900-203 | ENST00000585185 | 393 nt | TSL 3 BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | CLIC4P2-201 | ENST00000601934 | 717 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | Z82243.1-201 | ENST00000609432 | 473 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | SDR42E1P4-201 | ENST00000620894 | 481 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AC091931.1-201 | ENST00000623488 | 728 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | MTND5P6-201 | ENST00000422338 | 1798 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | ANKRD20A17P-201 | ENST00000511745 | 1330 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | LRRCC1-202 | ENST00000414626 | 4493 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | THOC2-216 | ENST00000491737 | 4452 nt | TSL 5 BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | U8.2-201 | ENST00000363156 | 134 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNU6-527P-201 | ENST00000363425 | 104 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | SNORA26.8-201 | ENST00000391306 | 124 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | ZNF705D-201 | ENST00000400078 | 925 nt | APPRIS P1 TSL 2 BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AL512604.1-201 | ENST00000404812 | 257 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNU6ATAC37P-201 | ENST00000408328 | 131 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNU2-3P-201 | ENST00000410144 | 191 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | RNA5SP450-201 | ENST00000411206 | 102 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | MTND3P17-201 | ENST00000416968 | 344 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HLA-DPA1 | P20036 | AL358234.1-201 | ENST00000421132 | 273 nt | TSL 5 BASIC | 2.19 | □□□□□ -2.06 | | |