Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RNU6-271P-201ENST00000363858 105 ntBASIC1.19□□□□□ -2.22
APOEP02649 RNU6-1025P-201ENST00000410629 104 ntBASIC1.19□□□□□ -2.22
APOEP02649 TOMM22P2-201ENST00000430735 237 ntBASIC1.19□□□□□ -2.22
APOEP02649 AC017099.1-201ENST00000448261 1028 ntBASIC1.19□□□□□ -2.22
APOEP02649 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.19□□□□□ -2.22
APOEP02649 snoU13.9-201ENST00000458927 103 ntBASIC1.19□□□□□ -2.22
APOEP02649 AC093259.1-201ENST00000509755 300 ntBASIC1.19□□□□□ -2.22
APOEP02649 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.19□□□□□ -2.22
APOEP02649 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC1.19□□□□□ -2.22
APOEP02649 AC087894.1-201ENST00000538359 518 ntBASIC1.19□□□□□ -2.22
APOEP02649 AC002400.1-201ENST00000569310 726 ntBASIC1.19□□□□□ -2.22
APOEP02649 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC1.19□□□□□ -2.22
APOEP02649 AC092656.1-203ENST00000624134 423 ntBASIC1.19□□□□□ -2.22
APOEP02649 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.19□□□□□ -2.22
APOEP02649 RNU6-655P-201ENST00000362858 107 ntBASIC1.18□□□□□ -2.22
APOEP02649 RNU6-843P-201ENST00000384454 104 ntBASIC1.18□□□□□ -2.22
APOEP02649 Y_RNA.534-201ENST00000384599 112 ntBASIC1.18□□□□□ -2.22
APOEP02649 RNU6-817P-201ENST00000391083 104 ntBASIC1.18□□□□□ -2.22
APOEP02649 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC1.18□□□□□ -2.22
APOEP02649 MIR320C1-201ENST00000408566 88 ntBASIC1.18□□□□□ -2.22
APOEP02649 MIR1285-1-201ENST00000408593 84 ntBASIC1.18□□□□□ -2.22
APOEP02649 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.18□□□□□ -2.22
APOEP02649 AL591704.2-201ENST00000421658 181 ntBASIC1.18□□□□□ -2.22
APOEP02649 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC1.18□□□□□ -2.22
APOEP02649 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC1.18□□□□□ -2.22
APOEP02649 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.18□□□□□ -2.22
APOEP02649 AL606517.1-201ENST00000446914 387 ntBASIC1.18□□□□□ -2.22
APOEP02649 DUXAP8-207ENST00000456786 622 ntBASIC1.18□□□□□ -2.22
APOEP02649 TOMM22P6-201ENST00000465035 409 ntBASIC1.18□□□□□ -2.22
APOEP02649 RNA5SP445-201ENST00000515889 115 ntBASIC1.18□□□□□ -2.22
APOEP02649 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
APOEP02649 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.18□□□□□ -2.22
APOEP02649 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.18□□□□□ -2.22
APOEP02649 DEFB108A-201ENST00000530110 222 ntBASIC1.18□□□□□ -2.22
APOEP02649 AL356057.1-201ENST00000533798 831 ntBASIC1.18□□□□□ -2.22
APOEP02649 MTND3P13-201ENST00000574391 343 ntBASIC1.18□□□□□ -2.22
APOEP02649 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.18□□□□□ -2.22
APOEP02649 AC093648.1-201ENST00000623546 606 ntBASIC1.18□□□□□ -2.22
APOEP02649 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
APOEP02649 RNU6-23P-201ENST00000363283 107 ntBASIC1.17□□□□□ -2.22
APOEP02649 RNU6-53P-201ENST00000365367 106 ntBASIC1.17□□□□□ -2.22
APOEP02649 MIR301A-201ENST00000385261 86 ntBASIC1.17□□□□□ -2.22
APOEP02649 AP000275.1-201ENST00000411943 390 ntBASIC1.17□□□□□ -2.22
APOEP02649 NCOR1P3-201ENST00000420479 303 ntBASIC1.17□□□□□ -2.22
APOEP02649 AC013262.1-201ENST00000426710 252 ntBASIC1.17□□□□□ -2.22
APOEP02649 USP9YP35-201ENST00000435696 412 ntBASIC1.17□□□□□ -2.22
APOEP02649 CR769776.1-201ENST00000441254 787 ntBASIC1.17□□□□□ -2.22
APOEP02649 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.17□□□□□ -2.22
APOEP02649 RPL30P6-201ENST00000475925 342 ntBASIC1.17□□□□□ -2.22
APOEP02649 AC113347.3-201ENST00000509113 148 ntBASIC1.17□□□□□ -2.22
APOEP02649 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.17□□□□□ -2.22
APOEP02649 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.17□□□□□ -2.22
APOEP02649 AC008507.2-201ENST00000588402 1176 ntBASIC1.17□□□□□ -2.22
APOEP02649 AC078795.2-201ENST00000602835 1252 ntBASIC1.17□□□□□ -2.22
APOEP02649 AL512427.1-201ENST00000618593 349 ntBASIC1.17□□□□□ -2.22
APOEP02649 MIR1248-201ENST00000629190 106 ntBASIC1.17□□□□□ -2.22
APOEP02649 AC091948.2-201ENST00000636510 279 ntBASIC1.17□□□□□ -2.22
APOEP02649 MIR3529-201ENST00000637713 78 ntBASIC1.17□□□□□ -2.22
APOEP02649 AC099654.8-201ENST00000637757 681 ntBASIC1.17□□□□□ -2.22
APOEP02649 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
APOEP02649 AC092125.1-201ENST00000562568 1995 ntBASIC1.16□□□□□ -2.22
APOEP02649 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
APOEP02649 Y_RNA.99-201ENST00000363138 105 ntBASIC1.16□□□□□ -2.22
APOEP02649 RNU6-278P-201ENST00000390945 109 ntBASIC1.16□□□□□ -2.22
APOEP02649 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.16□□□□□ -2.22
APOEP02649 USP9YP18-201ENST00000425912 695 ntBASIC1.16□□□□□ -2.22
APOEP02649 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.16□□□□□ -2.22
APOEP02649 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.16□□□□□ -2.22
APOEP02649 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.16□□□□□ -2.22
APOEP02649 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.16□□□□□ -2.22
APOEP02649 AC244505.5-201ENST00000443639 207 ntBASIC1.16□□□□□ -2.22
APOEP02649 MTCO2P25-201ENST00000447065 681 ntBASIC1.16□□□□□ -2.22
APOEP02649 AC012308.1-201ENST00000451232 178 ntBASIC1.16□□□□□ -2.22
APOEP02649 RPL23AP35-201ENST00000451906 501 ntBASIC1.16□□□□□ -2.22
APOEP02649 AL353752.1-201ENST00000454946 260 ntBASIC1.16□□□□□ -2.22
APOEP02649 MTND1P3-201ENST00000484956 952 ntBASIC1.16□□□□□ -2.22
APOEP02649 AC132942.1-201ENST00000486753 483 ntBASIC1.16□□□□□ -2.22
APOEP02649 MTCYBP40-201ENST00000509390 1135 ntBASIC1.16□□□□□ -2.22
APOEP02649 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.16□□□□□ -2.22
APOEP02649 AC025465.3-201ENST00000510570 311 ntBASIC1.16□□□□□ -2.22
APOEP02649 RNU6-1315P-201ENST00000517187 99 ntBASIC1.16□□□□□ -2.22
APOEP02649 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.16□□□□□ -2.22
APOEP02649 AC092325.1-201ENST00000566449 554 ntBASIC1.16□□□□□ -2.22
APOEP02649 AC136618.2-201ENST00000575091 400 ntBASIC1.16□□□□□ -2.22
APOEP02649 MIR4781-201ENST00000585250 76 ntBASIC1.16□□□□□ -2.22
APOEP02649 MIR4295-201ENST00000585286 85 ntBASIC1.16□□□□□ -2.22
APOEP02649 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.16□□□□□ -2.22
APOEP02649 AC092574.1-201ENST00000609771 420 ntBASIC1.16□□□□□ -2.22
APOEP02649 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.16□□□□□ -2.22
APOEP02649 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
APOEP02649 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.22
APOEP02649 snoU2_19.1-201ENST00000362361 80 ntBASIC1.15□□□□□ -2.23
APOEP02649 RNU6-942P-201ENST00000363002 107 ntBASIC1.15□□□□□ -2.23
APOEP02649 RNU6-1210P-201ENST00000363775 107 ntBASIC1.15□□□□□ -2.23
APOEP02649 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
APOEP02649 SNORA22-201ENST00000383907 134 ntBASIC1.15□□□□□ -2.23
APOEP02649 SNORA75B-201ENST00000384053 137 ntBASIC1.15□□□□□ -2.23
APOEP02649 SNORA22C-201ENST00000384614 134 ntBASIC1.15□□□□□ -2.23
APOEP02649 MIR618-201ENST00000385287 98 ntBASIC1.15□□□□□ -2.23
APOEP02649 USP9YP33-201ENST00000412220 421 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms