Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SNORA25.17-201ENST00000517184 124 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AC109479.2-201ENST00000517842 174 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXC11O43248 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
HOXC11O43248 AC010186.2-204ENST00000537668 439 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AC023050.3-201ENST00000541142 333 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXC11O43248 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXC11O43248 AC138761.3-201ENST00000579993 334 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 VN1R80P-201ENST00000597126 338 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AC092747.3-201ENST00000603769 301 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AC021646.1-201ENST00000605469 484 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 AC084782.3-201ENST00000612282 578 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 MIR6733-201ENST00000635723 61 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXC11O43248 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
HOXC11O43248 RBBP8P1-201ENST00000449447 1844 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 Z75746.1-201ENST00000440243 2080 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 MTND4P27-201ENST00000450813 1354 ntBASIC2.97□□□□□ -1.93
HOXC11O43248 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
HOXC11O43248 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
HOXC11O43248 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.93
HOXC11O43248 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXC11O43248 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXC11O43248 Y_RNA.450-201ENST00000384198 113 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 RNU6-908P-201ENST00000410160 94 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 RNU6-1328P-201ENST00000410938 106 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 AC097463.2-201ENST00000421074 142 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 USP9YP18-201ENST00000425912 695 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 AL591043.1-201ENST00000432461 424 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXC11O43248 Y_RNA.654-201ENST00000497848 106 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXC11O43248 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.96□□□□□ -1.94
HOXC11O43248 AC023141.11-201ENST00000508864 202 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXC11O43248 AC090115.3-201ENST00000553218 849 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 RPS15AP11-201ENST00000594193 385 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 AL021997.1-201ENST00000605757 193 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 AC090517.2-201ENST00000614966 680 ntBASIC2.96□□□□□ -1.94
HOXC11O43248 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXC11O43248 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXC11O43248 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXC11O43248 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXC11O43248 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXC11O43248 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.95□□□□□ -1.94
HOXC11O43248 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 Y_RNA.38-201ENST00000362617 102 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 SNORD114-19-201ENST00000363072 75 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 Y_RNA.231-201ENST00000364358 102 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 Y_RNA.453-201ENST00000384223 109 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 RNU6-1245P-201ENST00000411130 106 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 AC074117.2-201ENST00000417130 397 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 AC087499.2-201ENST00000432861 149 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 AL445687.1-201ENST00000439946 251 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXC11O43248 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXC11O43248 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXC11O43248 RPL23AP45-201ENST00000476406 468 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 RN7SL633P-201ENST00000488974 297 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXC11O43248 AIG1P1-201ENST00000503376 148 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 SNORA25.11-201ENST00000515935 105 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 SNORA14.1-201ENST00000516113 141 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXC11O43248 AC105137.2-201ENST00000569073 466 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 AL356280.1-201ENST00000603614 379 ntBASIC2.95□□□□□ -1.94
HOXC11O43248 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXC11O43248 SNORD56.1-201ENST00000362913 68 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 RNY3P3-201ENST00000363816 102 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 RNU6-487P-201ENST00000365430 104 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 RNU4-20P-201ENST00000365601 151 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 Y_RNA.378-201ENST00000365652 113 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 RNU6-877P-201ENST00000383868 107 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
HOXC11O43248 RNU6-1106P-201ENST00000390845 107 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 RNA5SP184-201ENST00000411071 108 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 ERLEC1P1-201ENST00000433806 578 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXC11O43248 AC124916.1-201ENST00000444020 547 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXC11O43248 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.94□□□□□ -1.94
HOXC11O43248 MIR4319-201ENST00000577285 85 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 AC010525.2-201ENST00000590920 195 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 APOOP1-201ENST00000604695 592 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 RNU6-85P-201ENST00000605989 107 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 AC069294.1-201ENST00000608397 350 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 AC092807.2-201ENST00000609367 243 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXC11O43248 AC103705.1-201ENST00000619013 241 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 AC005858.4-201ENST00000623191 700 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 U4.7-201ENST00000638126 106 ntBASIC2.94□□□□□ -1.94
HOXC11O43248 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
HOXC11O43248 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXC11O43248 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HOXC11O43248 AC093010.3-201ENST00000570269 15214 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 OR56A5-201ENST00000340110 738 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 AC062016.1-201ENST00000355719 319 ntBASIC2.93□□□□□ -1.94
HOXC11O43248 SNORA46-201ENST00000384762 135 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms