Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
P20040 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
P20040 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
P20040 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
P20040 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 Spsb2-203ENSMUST00000112473 1322 ntBASIC14.39□□□□□ -0.11
P20040 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
P20040 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC14.38□□□□□ -0.11
P20040 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
P20040 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
P20040 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC14.38□□□□□ -0.11
P20040 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
P20040 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC14.38□□□□□ -0.11
P20040 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC14.38□□□□□ -0.11
P20040 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Gm22697-201ENSMUST00000175194 63 ntBASIC14.38□□□□□ -0.11
P20040 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC14.38□□□□□ -0.11
P20040 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
P20040 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
P20040 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
P20040 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC14.37□□□□□ -0.11
P20040 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC14.37□□□□□ -0.11
P20040 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
P20040 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC14.37□□□□□ -0.11
P20040 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
P20040 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
P20040 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
P20040 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
P20040 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
P20040 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC14.36□□□□□ -0.11
P20040 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
P20040 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC14.36□□□□□ -0.11
P20040 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
P20040 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC14.36□□□□□ -0.11
P20040 Ptprs-211ENSMUST00000223859 5588 ntBASIC14.36□□□□□ -0.11
P20040 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
P20040 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
P20040 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
P20040 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
P20040 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms