Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC126118.1-201ENST00000607744 628 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC109347.2-201ENST00000610220 349 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 UBE2Q2P6-201ENST00000612666 153 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC073534.2-201ENST00000620377 381 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC139792.2-201ENST00000624218 587 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 RNU6-1097P-201ENST00000363586 107 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 RNU6-395P-201ENST00000365662 106 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 RNU6-1083P-201ENST00000384022 107 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 HMGN2P19-201ENST00000425149 265 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC010153.1-201ENST00000432862 727 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AL031183.1-201ENST00000457667 207 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC104806.1-201ENST00000508720 308 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 Y_RNA.689-201ENST00000516589 107 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AP002963.1-201ENST00000530590 184 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC068135.2-201ENST00000569293 1028 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC098614.4-201ENST00000607601 462 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 RNU6-91P-201ENST00000607774 107 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 MIR8081-201ENST00000611533 95 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC073114.1-201ENST00000612027 490 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AP001486.3-201ENST00000615334 372 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 RMST_2.1-201ENST00000617263 136 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
SHANK1Q9Y566 AC138915.1-201ENST00000565427 1685 ntBASIC1.58□□□□□ -2.16
SHANK1Q9Y566 Y_RNA.194-201ENST00000363985 102 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 RNU6-517P-201ENST00000384362 110 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 RNU2-3P-201ENST00000410144 191 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 BPY2DP-201ENST00000422208 265 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC073464.1-201ENST00000429823 534 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 RPL31P35-201ENST00000431058 377 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AL627311.1-201ENST00000431514 115 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 USP9YP29-201ENST00000445112 563 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 RPL26P9-201ENST00000457466 433 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AL162395.1-201ENST00000457882 422 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 RNU6-685P-201ENST00000517088 95 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AGGF1P4-201ENST00000568249 801 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 MIR4782-201ENST00000577987 79 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC010620.1-201ENST00000601088 1102 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC004852.3-201ENST00000614131 326 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AP003122.6-201ENST00000623831 495 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 SNORD56.2-201ENST00000363242 71 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 RNY3P3-201ENST00000363816 102 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 SMIM11P1-201ENST00000369586 178 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 SET-203ENST00000372688 801 ntTSL 2 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 RNU1-57P-201ENST00000384491 166 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 POLR2J4-204ENST00000418424 324 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 MTCO2P11-201ENST00000431069 680 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC073614.1-201ENST00000438690 650 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 MTND4LP16-201ENST00000440828 295 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 DDX3P2-201ENST00000446138 111 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 USP9YP12-201ENST00000450481 570 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 ATP5J2P3-201ENST00000451550 258 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 MTND2P24-201ENST00000453434 806 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC093899.1-201ENST00000457984 376 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 SUMO2P6-201ENST00000505273 288 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC010424.1-201ENST00000506336 297 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 RAC1P5-201ENST00000512182 576 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 MTND3P5-201ENST00000512798 333 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 SNORA31.19-201ENST00000517079 126 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC060788.1-201ENST00000521318 469 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC022616.3-201ENST00000523940 148 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.57□□□□□ -2.16
SHANK1Q9Y566 PSMA3P-201ENST00000555485 635 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 MYL12BP1-201ENST00000569826 507 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 HMGN2P15-201ENST00000585707 270 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC119751.7-201ENST00000600494 245 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 MIR502-201ENST00000606349 86 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC097065.2-201ENST00000608159 533 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 AC095038.3-201ENST00000634439 195 ntBASIC1.57□□□□□ -2.16
SHANK1Q9Y566 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 277.7 ms