Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL512633.1-201ENST00000399931 655 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 AL133475.1-201ENST00000404414 305 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 NCOR1P3-201ENST00000420479 303 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 U8.21-201ENST00000459536 136 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 AC110794.1-201ENST00000505816 425 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 FCF1P8-201ENST00000510322 597 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 RPL39P5-202ENST00000512505 151 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 SMURF2P1-201ENST00000514992 481 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 Y_RNA.682-201ENST00000516457 100 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 SNORA31.23-201ENST00000517219 133 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 RNA5SP454-201ENST00000517231 127 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 GLYCAM1-201ENST00000546596 285 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 MIR4790-201ENST00000577799 79 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 AC010620.2-201ENST00000600135 313 ntBASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 SNORD81.2-201ENST00000365153 76 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 Y_RNA.604-201ENST00000410574 102 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 RNU6-293P-201ENST00000411259 106 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 AC138623.1-201ENST00000418060 216 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 PDCL2P1-201ENST00000419302 352 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 AL645568.3-201ENST00000433683 316 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 AMD1P1-201ENST00000457220 922 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 TRBV12-2-201ENST00000489763 344 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 MTCO1P29-201ENST00000496868 288 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 AC103851.1-201ENST00000506833 274 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 BNIP3P16-201ENST00000589779 534 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 MTND5P30-201ENST00000452896 1731 ntBASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 IL33-202ENST00000417746 2327 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC9Q9Y3X0 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 SNORD74.4-201ENST00000364129 80 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 RNU1-140P-201ENST00000365040 165 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 SNORA44-201ENST00000384584 132 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 RNU6-1009P-201ENST00000390996 107 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 RPS29P13-201ENST00000402041 169 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 AC011742.1-201ENST00000431448 434 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 SNORA31.6-201ENST00000516241 130 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 TRAV32-201ENST00000553993 340 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 MIR4765-201ENST00000585007 77 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 AC243960.4-201ENST00000600532 288 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 VN1R107P-201ENST00000601784 209 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 MIR7515-201ENST00000637837 67 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 AL359854.1-201ENST00000614203 1594 ntBASIC4.61□□□□□ -1.67
CCDC9Q9Y3X0 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AL109809.4-201ENST00000603520 2185 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 RNU6-95P-201ENST00000384697 107 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 RHEBP3-201ENST00000411920 351 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AL590632.1-201ENST00000424289 371 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 FABP5P14-201ENST00000437273 393 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 HMGB1P18-201ENST00000438801 619 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 MRPL50P4-201ENST00000446432 475 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AC018437.1-201ENST00000492214 406 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 RPL22P13-201ENST00000493291 347 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AC091951.2-201ENST00000500762 203 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 SNORA31.18-201ENST00000517043 134 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AP005639.2-201ENST00000527592 928 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AC105137.2-201ENST00000569073 466 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 RPS15AP11-201ENST00000594193 385 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AC005046.1-201ENST00000608515 625 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 AL133216.2-202ENST00000634512 349 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 TPTEP1-208ENST00000636884 213 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 FAM35DP-201ENST00000323387 2712 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 MTND4P23-201ENST00000447723 1363 ntBASIC4.6□□□□□ -1.67
CCDC9Q9Y3X0 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms