Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 MTND3P25-201ENST00000509243 135 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 RNU1-86P-201ENST00000516108 154 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 RNU1-107P-201ENST00000516617 154 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AP005136.1-201ENST00000579765 429 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AC025449.1-201ENST00000603896 529 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 SNORD14A-201ENST00000606526 91 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AC096772.1-201ENST00000609146 564 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AC009090.3-201ENST00000616553 565 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 RMST_4.1-201ENST00000616886 107 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 AC136475.10-201ENST00000620253 385 ntBASIC2.29□□□□□ -2.04
DDX28Q9NUL7 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.29□□□□□ -2.04
DDX28Q9NUL7 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 SNORA3A-201ENST00000364113 130 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 RNU6-1103P-201ENST00000384150 107 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 RNU6-843P-201ENST00000384454 104 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 RNU6-45P-201ENST00000384471 107 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AL133475.1-201ENST00000404414 305 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 RAP1BP3-201ENST00000407180 549 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 RNU6-607P-201ENST00000411283 108 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 MTATP6P18-201ENST00000417994 673 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 PGBD4P6-201ENST00000421501 610 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 TOMM20P4-201ENST00000427861 435 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 CALM1P1-201ENST00000442082 433 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC012308.1-201ENST00000451232 178 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC006026.2-201ENST00000457376 180 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC112771.1-201ENST00000463581 102 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC006512.1-201ENST00000468816 291 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC079382.1-201ENST00000493346 557 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC105417.1-201ENST00000514691 285 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 Y_RNA.687-201ENST00000516558 91 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 MIR4703-201ENST00000577728 79 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC073539.2-201ENST00000597113 165 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 AC245008.1-201ENST00000608123 476 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.28□□□□□ -2.04
DDX28Q9NUL7 HAUS6P2-201ENST00000433254 2404 ntBASIC2.28□□□□□ -2.04
DDX28Q9NUL7 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 OR4G2P-201ENST00000328113 903 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 Y_RNA.359-201ENST00000365498 102 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 DEFB108C-201ENST00000400154 252 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AL355497.1-201ENST00000406262 551 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 RNU2-9P-201ENST00000410194 145 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 RNU2-52P-201ENST00000410680 190 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 RPLP0P7-201ENST00000416050 667 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AC108938.1-201ENST00000451204 136 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AL356010.1-201ENST00000456364 102 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AC074344.1-201ENST00000512823 224 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 LRRC34P2-201ENST00000514850 553 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 NBR2-204ENST00000587322 63 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 AC005609.4-201ENST00000625071 447 ntBASIC2.27□□□□□ -2.05
DDX28Q9NUL7 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.27□□□□□ -2.05
DDX28Q9NUL7 ZNF680P1-201ENST00000436625 1469 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 AC006020.1-201ENST00000420179 1854 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 OR56A5-201ENST00000340110 738 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 MIRLET7G-201ENST00000362280 84 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 SNORD114-19-201ENST00000363072 75 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 Y_RNA.159-201ENST00000363674 87 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 RNU6-715P-201ENST00000365204 103 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 RNU6-487P-201ENST00000365430 104 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 RNU5A-6P-201ENST00000384136 116 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
DDX28Q9NUL7 Y_RNA.582-201ENST00000391023 95 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 GSTA9P-201ENST00000406231 611 ntBASIC2.26□□□□□ -2.05
DDX28Q9NUL7 RNU2-3P-201ENST00000410144 191 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms