Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC093852.1-201ENST00000503587 266 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 MTCYBP43-201ENST00000513621 740 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 FABP5P5-201ENST00000515537 406 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 RNU5B-3P-201ENST00000516601 115 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.53□□□□□ -2.16
USP42Q9H9J4 MTATP6P3-201ENST00000581686 676 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.53□□□□□ -2.16
USP42Q9H9J4 AC018638.7-201ENST00000605836 1114 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 MIR6779-201ENST00000617283 64 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 AC013470.4-201ENST00000619978 986 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 AC123767.1-202ENST00000620407 817 ntBASIC1.53□□□□□ -2.16
USP42Q9H9J4 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
USP42Q9H9J4 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
USP42Q9H9J4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.53□□□□□ -2.16
USP42Q9H9J4 DDX43P2-201ENST00000604753 1354 ntBASIC1.53□□□□□ -2.17
USP42Q9H9J4 AC092125.1-201ENST00000562568 1995 ntBASIC1.52□□□□□ -2.17
USP42Q9H9J4 RNU6-997P-201ENST00000384725 107 ntBASIC1.52□□□□□ -2.17
USP42Q9H9J4 RNU6-298P-201ENST00000390888 96 ntBASIC1.52□□□□□ -2.17
USP42Q9H9J4 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.52□□□□□ -2.17
USP42Q9H9J4 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC1.52□□□□□ -2.17
USP42Q9H9J4 ZNF886P-201ENST00000450781 723 ntBASIC1.52□□□□□ -2.17
USP42Q9H9J4 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.52□□□□□ -2.17
USP42Q9H9J4 RNU1-98P-201ENST00000458992 160 ntBASIC1.52□□□□□ -2.17
USP42Q9H9J4 CYCSP27-201ENST00000527643 293 ntBASIC1.52□□□□□ -2.17
USP42Q9H9J4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.52□□□□□ -2.17
USP42Q9H9J4 AC021755.4-201ENST00000616620 456 ntBASIC1.52□□□□□ -2.17
USP42Q9H9J4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
USP42Q9H9J4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.52□□□□□ -2.17
USP42Q9H9J4 TEX21P-201ENST00000447107 1476 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 MTND5P33-201ENST00000571250 1450 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 RNU1-62P-201ENST00000362599 164 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 U8.3-201ENST00000363321 132 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 RNU4-91P-201ENST00000364778 135 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 Y_RNA.472-201ENST00000384322 102 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.51□□□□□ -2.17
USP42Q9H9J4 RAC1P6-201ENST00000423911 575 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.51□□□□□ -2.17
USP42Q9H9J4 AC015922.2-201ENST00000435593 184 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 RPL39P36-201ENST00000490784 156 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.51□□□□□ -2.17
USP42Q9H9J4 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.51□□□□□ -2.17
USP42Q9H9J4 SNORA19.3-201ENST00000516165 130 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 SNORA31.19-201ENST00000517079 126 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 AC022880.1-201ENST00000534017 973 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 DUXAP1-201ENST00000556632 463 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 MIR4285-201ENST00000581001 85 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 MIR4713-201ENST00000582691 75 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC1.51□□□□□ -2.17
USP42Q9H9J4 BNIP3P27-201ENST00000599991 412 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 AC021646.1-201ENST00000605469 484 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 AC093788.1-201ENST00000609356 927 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 AC245297.2-201ENST00000610119 565 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 AC004908.3-201ENST00000610248 625 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 RNU6-1192P-201ENST00000612197 107 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 RNU6-489P-201ENST00000618289 107 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 LINC02211-204ENST00000642024 1070 ntBASIC1.51□□□□□ -2.17
USP42Q9H9J4 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 RNU6-560P-201ENST00000364007 108 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 FTH1P15-201ENST00000406984 280 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 ARL2BPP4-201ENST00000506854 471 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC021146.8-201ENST00000507455 733 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 SNORA31.3-201ENST00000516029 96 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC090821.2-201ENST00000523552 176 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 AP006587.4-201ENST00000526053 529 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 AL606834.3-201ENST00000602615 496 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC073410.2-201ENST00000603240 332 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC126118.1-201ENST00000607744 628 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 RNU6-91P-201ENST00000607774 107 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 AP003476.1-201ENST00000623984 516 ntBASIC1.5□□□□□ -2.17
USP42Q9H9J4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
USP42Q9H9J4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.5□□□□□ -2.17
USP42Q9H9J4 AC068050.1-201ENST00000394891 380 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 AC083875.1-201ENST00000419509 405 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC1.49□□□□□ -2.17
USP42Q9H9J4 AL121601.2-201ENST00000438019 707 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 AP000949.1-201ENST00000438328 629 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 MTCO1P27-201ENST00000448269 226 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 ATP5J2P3-201ENST00000451550 258 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 AC092991.1-201ENST00000477176 376 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 RNU6-970P-201ENST00000516312 107 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 AC009902.1-201ENST00000519351 183 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 MTND1P36-201ENST00000522384 936 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC1.49□□□□□ -2.17
USP42Q9H9J4 AC093249.1-201ENST00000567049 203 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 MIR4293-201ENST00000584305 78 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.49□□□□□ -2.17
USP42Q9H9J4 AL121895.2-201ENST00000619558 447 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms