Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AL096701.2-201ENST00000416920 238 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 RPL32P28-201ENST00000443577 397 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 HIGD1AP2-201ENST00000446367 280 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 SCGB1D5P-201ENST00000515134 247 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 RNA5SP454-201ENST00000517231 127 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AC104576.1-201ENST00000524225 88 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 GTF3AP2-201ENST00000557014 266 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AC007151.1-201ENST00000572774 483 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 MIR5047-201ENST00000579212 100 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AC123912.5-201ENST00000605470 343 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AL138726.1-201ENST00000614873 333 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 Z69720.2-201ENST00000624755 279 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 SCARNA4-202ENST00000625402 129 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 AC112487.2-201ENST00000637950 304 ntBASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.17□□□□□ -1.9
PAAF1Q9BRP4 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 Z98749.2-208ENST00000381646 500 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 RNU6-72P-201ENST00000384285 79 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 Y_RNA.500-201ENST00000384466 111 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 RNU1-101P-201ENST00000391171 127 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AC074085.1-201ENST00000413598 418 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 BPY2DP-201ENST00000422208 265 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AL714022.1-201ENST00000439897 151 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AC012308.1-201ENST00000451232 178 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AMD1P1-201ENST00000457220 922 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AC006026.2-201ENST00000457376 180 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 RNU7-23P-201ENST00000459465 62 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AL049830.2-201ENST00000480072 201 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 RPS27P27-201ENST00000498779 255 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AC096745.1-201ENST00000509945 370 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 SNORA64.4-201ENST00000516632 81 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AP004607.1-201ENST00000524456 203 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 COPS8P3-201ENST00000526024 482 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 AP000787.2-201ENST00000604432 568 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 U7.8-201ENST00000619968 63 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 MIR1302-1-201ENST00000637932 143 ntBASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.16□□□□□ -1.9
PAAF1Q9BRP4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 RNU6-858P-201ENST00000362436 107 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 Y_RNA.384-201ENST00000383909 102 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AL031121.1-201ENST00000406553 254 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 MIR548F5-201ENST00000408421 86 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 RPL32P35-201ENST00000415214 394 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 UBE2V1P4-201ENST00000425374 344 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 RPS15AP5-201ENST00000436276 388 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 HIGD1AP11-201ENST00000438361 280 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AC098831.1-201ENST00000440661 216 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AC125238.1-201ENST00000448842 249 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AC130509.1-201ENST00000464158 433 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 RN7SL442P-201ENST00000473804 320 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 RN7SKP24-201ENST00000515888 284 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 RNA5SP356-201ENST00000515972 94 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AP005597.4-201ENST00000526762 229 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AP005639.2-201ENST00000527592 928 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AC079600.2-201ENST00000550076 130 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AL121821.2-201ENST00000556081 394 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 MIR4672-201ENST00000583126 81 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AC020895.1-201ENST00000595362 272 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AL132765.2-201ENST00000610812 351 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AC011890.2-201ENST00000613393 294 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 AC091152.2-201ENST00000591628 2569 ntBASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.15□□□□□ -1.91
PAAF1Q9BRP4 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
PAAF1Q9BRP4 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PAAF1Q9BRP4 AP003122.5-201ENST00000527668 3766 ntBASIC3.14□□□□□ -1.91
PAAF1Q9BRP4 RNU4-73P-201ENST00000363164 141 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms