Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL137790.1-201ENST00000634283 177 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 AC099654.5-201ENST00000636479 350 ntBASIC3.61□□□□□ -1.83
NUP88Q99567 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
NUP88Q99567 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NUP88Q99567 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
NUP88Q99567 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.6□□□□□ -1.83
NUP88Q99567 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.6□□□□□ -1.83
NUP88Q99567 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NUP88Q99567 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.6□□□□□ -1.83
NUP88Q99567 MIR148B-201ENST00000362252 99 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 RNU1-105P-201ENST00000363470 161 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 SNORA80A-201ENST00000363922 136 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
NUP88Q99567 SNORD15B-201ENST00000384714 146 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 AL096701.2-201ENST00000416920 238 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.6□□□□□ -1.83
NUP88Q99567 HMGB1P18-201ENST00000438801 619 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.6□□□□□ -1.83
NUP88Q99567 NIPA2P5-201ENST00000452282 464 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 RN7SL330P-201ENST00000469709 307 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.6□□□□□ -1.83
NUP88Q99567 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
NUP88Q99567 AP002404.1-201ENST00000532005 451 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.6□□□□□ -1.83
NUP88Q99567 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.6□□□□□ -1.83
NUP88Q99567 AL133216.2-202ENST00000634512 349 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NUP88Q99567 AC010680.1-201ENST00000590024 3590 ntBASIC3.6□□□□□ -1.83
NUP88Q99567 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
NUP88Q99567 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
NUP88Q99567 AC004944.1-201ENST00000517807 3059 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 Y_RNA.184-201ENST00000363884 108 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 Y_RNA.212-201ENST00000364177 102 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 RNU1-140P-201ENST00000365040 165 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 RN7SKP220-201ENST00000410611 288 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 RPL32P35-201ENST00000415214 394 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 NCOR1P3-201ENST00000420479 303 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.59□□□□□ -1.83
NUP88Q99567 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC3.59□□□□□ -1.83
NUP88Q99567 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
NUP88Q99567 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.59□□□□□ -1.83
NUP88Q99567 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.59□□□□□ -1.83
NUP88Q99567 MTND1P11-201ENST00000456661 876 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 RPL23AP45-201ENST00000476406 468 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 AC116655.1-201ENST00000508324 901 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 AC008526.1-201ENST00000509149 338 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.59□□□□□ -1.83
NUP88Q99567 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.59□□□□□ -1.83
NUP88Q99567 RNU6-566P-201ENST00000516790 107 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 RNU6-1088P-201ENST00000516850 104 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 AP005597.4-201ENST00000526762 229 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 AC023043.2-201ENST00000589678 1026 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 AL138726.1-201ENST00000614873 333 ntBASIC3.59□□□□□ -1.83
NUP88Q99567 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.59□□□□□ -1.83
NUP88Q99567 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
NUP88Q99567 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.59□□□□□ -1.83
NUP88Q99567 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.59□□□□□ -1.83
NUP88Q99567 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
NUP88Q99567 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
NUP88Q99567 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
NUP88Q99567 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 Y_RNA.301-201ENST00000364990 103 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 MIR518D-201ENST00000385014 87 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 SNORD56-201ENST00000413522 71 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.58□□□□□ -1.84
NUP88Q99567 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.58□□□□□ -1.84
NUP88Q99567 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.58□□□□□ -1.84
NUP88Q99567 SNAP23P1-201ENST00000433229 246 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 AL161651.1-201ENST00000440882 223 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 RPL32P28-201ENST00000443577 397 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 AC107399.1-201ENST00000451226 265 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.58□□□□□ -1.84
NUP88Q99567 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.58□□□□□ -1.84
NUP88Q99567 RPS29P26-201ENST00000477483 171 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 RPL23AP49-201ENST00000492925 468 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 AC096745.1-201ENST00000509945 370 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 RNU6-377P-201ENST00000515965 102 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 COPS8P3-201ENST00000526024 482 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.58□□□□□ -1.84
NUP88Q99567 AC005261.5-201ENST00000596280 355 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 ELOCP5-201ENST00000604924 333 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 AL121917.1-203ENST00000605534 577 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 LARP7P1-201ENST00000605576 316 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 MIR622-201ENST00000638396 96 ntBASIC3.58□□□□□ -1.84
NUP88Q99567 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NUP88Q99567 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.58□□□□□ -1.84
NUP88Q99567 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
NUP88Q99567 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
NUP88Q99567 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 RNU6-78P-201ENST00000362897 107 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 SNORA71.1-201ENST00000364523 117 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 Y_RNA.263-201ENST00000364659 114 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 RNU1-100P-201ENST00000365255 165 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 RNU6-827P-201ENST00000365553 106 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 CD24P4-201ENST00000382840 243 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 SNORD116-11-201ENST00000383882 92 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 MT-TD-201ENST00000387419 68 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 MIR548F5-201ENST00000408421 86 ntBASIC3.57□□□□□ -1.84
NUP88Q99567 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 358.7 ms