Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 RNA5SP180-201ENST00000516181 101 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 Y_RNA.711-201ENST00000516993 102 ntBASIC-0.49□□□□□ -2.49
VPS13AQ96RL7 RNU6-271P-201ENST00000363858 105 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 U3.13-201ENST00000364804 214 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 RNU6-193P-201ENST00000410977 107 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 RPL17P35-201ENST00000432217 549 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 AC098869.1-201ENST00000481627 292 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 AC087272.1-201ENST00000523624 533 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 AC034236.3-201ENST00000605999 461 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 MIR424-201ENST00000362227 98 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 RNU6-877P-201ENST00000383868 107 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 AC114482.1-201ENST00000418010 247 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 RAC1P8-201ENST00000427086 527 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 USP9YP24-201ENST00000434374 697 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 RN7SKP277-201ENST00000516895 283 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 AC068790.6-201ENST00000602558 258 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 KATNBL1P5-201ENST00000605015 517 ntBASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC-0.5□□□□□ -2.49
VPS13AQ96RL7 Y_RNA.428-201ENST00000384078 102 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 RNU6-40P-201ENST00000384254 107 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 SNORA12.1-201ENST00000390873 148 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 RPS3AP17-201ENST00000472594 777 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 RNA5SP327-201ENST00000362494 101 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 SETP11-201ENST00000473027 690 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 AL590240.4-201ENST00000616908 390 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 AC093648.1-201ENST00000623546 606 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 AC068647.2-201ENST00000637380 353 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 MIR7515-201ENST00000637837 67 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 RNU4-84P-201ENST00000364200 139 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 OR8K2P-201ENST00000524645 927 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 HIGD1AP17-201ENST00000554576 276 ntBASIC-0.51□□□□□ -2.49
VPS13AQ96RL7 HMGN1P12-201ENST00000499125 195 ntBASIC-0.52□□□□□ -2.49
VPS13AQ96RL7 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC-0.52□□□□□ -2.49
VPS13AQ96RL7 SNORA42.1-201ENST00000363515 137 ntBASIC-0.52□□□□□ -2.49
VPS13AQ96RL7 RNA5SP300-201ENST00000391197 107 ntBASIC-0.52□□□□□ -2.49
VPS13AQ96RL7 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC-0.52□□□□□ -2.49
VPS13AQ96RL7 RNU6ATAC13P-201ENST00000516152 131 ntBASIC-0.52□□□□□ -2.49
VPS13AQ96RL7 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC-0.52□□□□□ -2.49
VPS13AQ96RL7 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC-0.52□□□□□ -2.49
VPS13AQ96RL7 AC022254.1-201ENST00000567857 235 ntBASIC-0.52□□□□□ -2.49
VPS13AQ96RL7 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AL135790.2-201ENST00000437701 267 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 SCARNA18-201ENST00000459004 134 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 RNVU1-2-201ENST00000516326 135 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AC090888.1-201ENST00000561335 1141 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AC096656.1-201ENST00000623826 1364 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 RPL26P27-201ENST00000414397 437 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AL590632.1-201ENST00000424289 371 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 GTF2IP3-201ENST00000433887 494 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 RPL30P7-201ENST00000479312 323 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AC023157.2-201ENST00000540596 141 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AC092447.9-201ENST00000603395 144 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AC080013.4-201ENST00000607624 649 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AC068880.5-201ENST00000624331 290 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 MIR643-201ENST00000385267 97 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 RNU6-1320P-201ENST00000390838 107 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 RNU6-1269P-201ENST00000391139 107 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 RNU6-599P-201ENST00000459383 107 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 RNU6-1193P-201ENST00000459461 107 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 AC105185.1-201ENST00000518705 535 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 RNU6-368P-201ENST00000620928 107 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 RNU6-538P-201ENST00000622329 107 ntBASIC-0.53□□□□□ -2.49
VPS13AQ96RL7 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 MTCYBP16-201ENST00000509187 1129 ntBASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 MTND1P22-201ENST00000510572 951 ntBASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 SNRPEP9-201ENST00000436794 238 ntBASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 AC022523.2-201ENST00000561045 150 ntBASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 BPTFP1-201ENST00000579209 492 ntBASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 AC104408.1-201ENST00000605241 170 ntBASIC-0.54□□□□□ -2.5
VPS13AQ96RL7 MIR520F-201ENST00000384824 87 ntBASIC-0.55□□□□□ -2.5
VPS13AQ96RL7 AC098614.2-201ENST00000426040 255 ntBASIC-0.55□□□□□ -2.5
VPS13AQ96RL7 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.55□□□□□ -2.5
VPS13AQ96RL7 AC016925.1-201ENST00000458303 298 ntBASIC-0.55□□□□□ -2.5
VPS13AQ96RL7 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC-0.55□□□□□ -2.5
VPS13AQ96RL7 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC-0.55□□□□□ -2.5
VPS13AQ96RL7 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC-0.55□□□□□ -2.5
VPS13AQ96RL7 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC-0.55□□□□□ -2.5
VPS13AQ96RL7 MTND2P13-201ENST00000577438 1039 ntBASIC-0.55□□□□□ -2.5
VPS13AQ96RL7 MIR3115-201ENST00000577915 68 ntBASIC-0.55□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms