Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.94□□□□□ -1.78
SMC1BQ8NDV3 AL732372.2-225ENST00000642124 456 ntBASIC3.94□□□□□ -1.78
SMC1BQ8NDV3 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.94□□□□□ -1.78
SMC1BQ8NDV3 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
SMC1BQ8NDV3 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.94□□□□□ -1.78
SMC1BQ8NDV3 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.94□□□□□ -1.78
SMC1BQ8NDV3 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
SMC1BQ8NDV3 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SMC1BQ8NDV3 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AC002546.1-201ENST00000588041 2504 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 SNORD62.1-201ENST00000362541 86 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 SNORA63-201ENST00000363450 132 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 RNU6-166P-201ENST00000384371 107 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 SNORD116-29-201ENST00000384516 83 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 RPS4XP3-201ENST00000398541 413 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 RNU6-954P-201ENST00000411355 107 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AL354751.2-201ENST00000415471 210 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AL096701.2-201ENST00000416920 238 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 PGBD4P6-201ENST00000421501 610 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 RPL37P4-201ENST00000448908 268 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 Y_RNA.653-201ENST00000459091 95 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AP002884.2-201ENST00000471647 395 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AC009812.2-201ENST00000517657 457 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AC104576.1-201ENST00000524225 88 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AC011602.1-201ENST00000546484 331 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 ELOCP5-201ENST00000604924 333 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 AC064836.2-201ENST00000609491 462 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SMC1BQ8NDV3 MTND4P23-201ENST00000447723 1363 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RNU6-1227P-201ENST00000383981 107 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RNU6-1035P-201ENST00000384477 107 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 Y_RNA.579-201ENST00000390939 94 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 EEF1A1P41-201ENST00000414667 207 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 NUP35P1-201ENST00000422734 947 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RN7SL330P-201ENST00000469709 307 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 HMGB3P15-201ENST00000507326 574 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RNU1-41P-201ENST00000516161 162 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RNU1-48P-201ENST00000516400 162 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 BRDTP1-201ENST00000605735 677 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 PISRT1.1-201ENST00000616930 107 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 AC002076.2-201ENST00000617362 122 ntBASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SMC1BQ8NDV3 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-37P-201ENST00000362692 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-1188P-201ENST00000363795 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-11P-201ENST00000364234 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-25P-201ENST00000383873 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-1-201ENST00000383898 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-48P-201ENST00000384161 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-36P-201ENST00000384172 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-4P-201ENST00000384205 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-5P-201ENST00000384238 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-43P-201ENST00000384302 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-3P-201ENST00000384314 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-16P-201ENST00000384385 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-15P-201ENST00000384534 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-2-201ENST00000384627 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-29P-201ENST00000384637 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-9-201ENST00000384776 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 RNU6-33P-201ENST00000384793 107 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 SNORD73A-201ENST00000386062 65 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 MIR888-201ENST00000401186 77 ntBASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SMC1BQ8NDV3 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms