Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AL157398.1-201ENST00000452981 186 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.18□□□□□ -2.38
COL7A1Q02388 AP1S2P1-201ENST00000457344 379 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 MTCO3P2-201ENST00000457365 171 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 RPL31P3-201ENST00000458430 332 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC112771.1-201ENST00000463581 102 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.18□□□□□ -2.38
COL7A1Q02388 RPL23AP54-201ENST00000495129 419 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC147055.4-201ENST00000504399 745 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 COX7A2P2-201ENST00000505291 250 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC0.18□□□□□ -2.38
COL7A1Q02388 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.18□□□□□ -2.38
COL7A1Q02388 CYCSP27-201ENST00000527643 293 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 ANKRD36BP2-206ENST00000575193 1245 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 MIR3126-201ENST00000577443 74 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 MIR4661-201ENST00000582720 75 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.18□□□□□ -2.38
COL7A1Q02388 AP001429.1-201ENST00000602568 530 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC025449.1-201ENST00000603896 529 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AL355297.3-201ENST00000604082 446 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC084824.5-201ENST00000612009 413 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AL603758.1-201ENST00000618654 241 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.18□□□□□ -2.38
COL7A1Q02388 AC090617.9-201ENST00000623751 147 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC0.18□□□□□ -2.38
COL7A1Q02388 AP003399.1-201ENST00000637534 361 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.18□□□□□ -2.38
COL7A1Q02388 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC0.18□□□□□ -2.38
COL7A1Q02388 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.17□□□□□ -2.38
COL7A1Q02388 snoU2_19.1-201ENST00000362361 80 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU6-46P-201ENST00000383860 107 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU6-339P-201ENST00000384310 107 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU6-712P-201ENST00000410558 100 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU2-63P-201ENST00000410792 194 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 EIF4EP2-201ENST00000422816 654 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RPL37P21-201ENST00000435890 276 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AL050341.1-201ENST00000447743 313 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AC067940.1-201ENST00000458411 300 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC015724.1-201ENST00000478577 156 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 HMGB1P35-201ENST00000503360 598 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU6-202P-201ENST00000515998 96 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 IGJP1-201ENST00000522682 475 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 POLR2KP1-201ENST00000553226 168 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC021739.1-201ENST00000559631 174 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AC012669.1-201ENST00000603209 283 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL009028.1-201ENST00000604895 802 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL132822.1-201ENST00000617063 513 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 MIR8065-201ENST00000620577 100 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AC099654.5-201ENST00000636479 350 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 Z75746.1-201ENST00000440243 2080 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU6-1327P-201ENST00000365302 105 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU6-444P-201ENST00000383988 108 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNA5SP56-201ENST00000410277 118 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU6-272P-201ENST00000411028 104 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 NCOR1P3-201ENST00000420479 303 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AC007742.1-201ENST00000425789 329 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC092634.2-201ENST00000428146 1010 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 ELOCP26-201ENST00000436067 329 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.17□□□□□ -2.38
COL7A1Q02388 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL353752.1-201ENST00000454946 260 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 RPL32P14-201ENST00000463196 378 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL163195.1-201ENST00000496941 348 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL133373.1-201ENST00000497098 94 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU7-40P-201ENST00000516397 64 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
COL7A1Q02388 CYB5AP5-201ENST00000549779 389 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC093249.1-201ENST00000567049 203 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 XIAPP1-201ENST00000603162 600 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AP001330.4-201ENST00000604350 154 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC018618.2-201ENST00000604770 446 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL365204.3-201ENST00000612448 685 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AL109659.3-201ENST00000624985 950 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 ZNF680P1-201ENST00000436625 1469 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 ENSAP3-201ENST00000312710 333 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU6-1249P-201ENST00000363237 111 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 Y_RNA.352-201ENST00000365439 102 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 RNU6-1226P-201ENST00000384317 107 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 MIR525-201ENST00000384978 85 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 MIR561-201ENST00000385216 97 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
COL7A1Q02388 AL589655.1-201ENST00000405398 482 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL359704.1-201ENST00000411586 781 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC138623.1-201ENST00000418060 216 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.17□□□□□ -2.38
COL7A1Q02388 MAL2-206ENST00000522187 547 ntTSL 4 BASIC0.17□□□□□ -2.38
COL7A1Q02388 AC091489.2-201ENST00000566263 604 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC090079.2-201ENST00000575289 768 ntBASIC0.17□□□□□ -2.38
COL7A1Q02388 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms