Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MTND1P31-201ENST00000449206 961 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 TPRKBP1-201ENST00000456243 481 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.66□□□□□ -2.3
FOXA3P55318 RPL31P3-201ENST00000458430 332 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AC108210.2-201ENST00000503681 201 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AC103851.1-201ENST00000506833 274 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AC019176.1-201ENST00000518519 225 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.66□□□□□ -2.3
FOXA3P55318 CYP3A52P-201ENST00000563326 91 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AC079148.1-201ENST00000565944 819 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
FOXA3P55318 MIR5708-201ENST00000579723 85 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 MIR4661-201ENST00000582720 75 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 AC025754.2-201ENST00000606491 432 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.66□□□□□ -2.3
FOXA3P55318 AL353997.5-201ENST00000618886 171 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 MIR8065-201ENST00000620577 100 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.66□□□□□ -2.3
FOXA3P55318 AC097460.3-201ENST00000623099 442 ntBASIC0.66□□□□□ -2.3
FOXA3P55318 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
FOXA3P55318 AC092447.10-201ENST00000620607 1652 ntBASIC0.65□□□□□ -2.3
FOXA3P55318 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
FOXA3P55318 SNORD114-2-201ENST00000363953 78 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 RNU6-944P-201ENST00000364023 107 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 RNU6-487P-201ENST00000365430 104 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.65□□□□□ -2.31
FOXA3P55318 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC0.65□□□□□ -2.31
FOXA3P55318 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.65□□□□□ -2.31
FOXA3P55318 AC013410.2-201ENST00000422627 201 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC0.65□□□□□ -2.31
FOXA3P55318 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC0.65□□□□□ -2.31
FOXA3P55318 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC0.65□□□□□ -2.31
FOXA3P55318 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.65□□□□□ -2.31
FOXA3P55318 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC0.65□□□□□ -2.31
FOXA3P55318 MTND2P4-201ENST00000445034 1004 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.65□□□□□ -2.31
FOXA3P55318 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 MED28P2-201ENST00000475771 317 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 RNU6-965P-201ENST00000516721 96 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 RNU6-572P-201ENST00000516724 80 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 CBX3P8-201ENST00000532412 525 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 AC023538.1-201ENST00000534576 736 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 SNRPGP1-201ENST00000553864 222 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC0.65□□□□□ -2.31
FOXA3P55318 AC098483.2-201ENST00000603158 454 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 AP001981.2-201ENST00000603241 418 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 AL391646.1-201ENST00000603860 190 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 AC112220.3-201ENST00000605502 502 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 AC231657.1-201ENST00000624313 397 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 AL356094.1-201ENST00000624663 1212 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.65□□□□□ -2.31
FOXA3P55318 DDX43P2-201ENST00000604753 1354 ntBASIC0.65□□□□□ -2.31
FOXA3P55318 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
FOXA3P55318 RNU6-743P-201ENST00000364151 106 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 RNU6-354P-201ENST00000383862 107 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 Y_RNA.408-201ENST00000383987 102 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 RNU6-610P-201ENST00000384264 107 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 RNU6-296P-201ENST00000384608 107 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
FOXA3P55318 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
FOXA3P55318 MRPL35P1-201ENST00000404272 572 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AL359634.1-202ENST00000404721 284 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC0.64□□□□□ -2.31
FOXA3P55318 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC0.64□□□□□ -2.31
FOXA3P55318 MTND5P14-201ENST00000441481 1267 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC0.64□□□□□ -2.31
FOXA3P55318 OR2AQ1P-201ENST00000451972 200 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 MTND2P3-201ENST00000452458 470 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 RPL9P9-202ENST00000466501 579 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AC104563.1-201ENST00000476147 376 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC0.64□□□□□ -2.31
FOXA3P55318 AC112198.4-201ENST00000515450 351 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AC009902.1-201ENST00000519351 183 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 MTCO3P15-201ENST00000526563 574 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC0.64□□□□□ -2.31
FOXA3P55318 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC0.64□□□□□ -2.31
FOXA3P55318 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC0.64□□□□□ -2.31
FOXA3P55318 AC126365.2-201ENST00000580630 379 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 VN1R83P-201ENST00000595685 445 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AL020996.3-201ENST00000606617 222 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AL021879.1-201ENST00000611756 288 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.64□□□□□ -2.31
FOXA3P55318 AC106800.4-201ENST00000614905 153 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AC027335.2-201ENST00000624030 375 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 AC068205.3-201ENST00000636385 468 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 MIR3529-201ENST00000637713 78 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
FOXA3P55318 AC100821.1-201ENST00000523153 2479 ntBASIC0.64□□□□□ -2.31
FOXA3P55318 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
FOXA3P55318 RNU6-1210P-201ENST00000363775 107 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 RNU1-36P-201ENST00000365130 165 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 MIR515-2-201ENST00000384883 83 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 MIR515-1-201ENST00000384884 83 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 RNU6-360P-201ENST00000390944 104 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 CBX3P9-201ENST00000402326 552 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 AC068533.2-201ENST00000411872 306 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 AC069282.1-201ENST00000411911 526 ntBASIC0.63□□□□□ -2.31
FOXA3P55318 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms