Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RMST_3.1-201ENST00000611651 109 ntBASIC2.67□□□□□ -1.98
HNF4AP41235 MIR6134-201ENST00000617606 109 ntBASIC2.67□□□□□ -1.98
HNF4AP41235 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.67□□□□□ -1.98
HNF4AP41235 FO624990.1-201ENST00000636373 85 ntBASIC2.67□□□□□ -1.98
HNF4AP41235 MIR3662-201ENST00000637030 95 ntBASIC2.67□□□□□ -1.98
HNF4AP41235 CDC27P3-201ENST00000635418 1910 ntBASIC2.67□□□□□ -1.98
HNF4AP41235 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HNF4AP41235 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.66□□□□□ -1.98
HNF4AP41235 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HNF4AP41235 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HNF4AP41235 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HNF4AP41235 RNU6-190P-201ENST00000384154 102 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 RNU6-903P-201ENST00000391270 109 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HNF4AP41235 OR9R1P-201ENST00000412200 877 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.66□□□□□ -1.98
HNF4AP41235 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.66□□□□□ -1.98
HNF4AP41235 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.66□□□□□ -1.98
HNF4AP41235 AL591704.1-201ENST00000432574 275 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 AC087499.2-201ENST00000432861 149 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 SEPT14P3-201ENST00000439401 183 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 AL732372.2-207ENST00000445840 183 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.66□□□□□ -1.98
HNF4AP41235 SEPT14P2-201ENST00000453405 183 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.66□□□□□ -1.98
HNF4AP41235 HIGD1AP13-201ENST00000509878 289 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.66□□□□□ -1.98
HNF4AP41235 SEPT14P4-201ENST00000513445 186 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 RNU6-581P-201ENST00000516214 105 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 MIR892C-201ENST00000516410 77 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 RNU6-572P-201ENST00000516724 80 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 FO082796.1-201ENST00000523795 183 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 MIR3670-2-201ENST00000582974 65 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 MIR3670-1-201ENST00000584160 65 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 MIR3670-3-201ENST00000584855 65 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.66□□□□□ -1.98
HNF4AP41235 AC008521.1-201ENST00000587471 187 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 AL355073.2-201ENST00000612106 557 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 MIR3670-4-201ENST00000612260 65 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 DUXAP9-208ENST00000622815 614 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 AC099654.14-201ENST00000638599 341 ntBASIC2.66□□□□□ -1.98
HNF4AP41235 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.66□□□□□ -1.98
HNF4AP41235 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.66□□□□□ -1.98
HNF4AP41235 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
HNF4AP41235 FGF7P8-201ENST00000402994 292 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AC080125.1-201ENST00000414888 684 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AC092809.3-201ENST00000415453 231 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.65□□□□□ -1.99
HNF4AP41235 CYCSP48-201ENST00000417124 323 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.65□□□□□ -1.99
HNF4AP41235 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.65□□□□□ -1.99
HNF4AP41235 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.65□□□□□ -1.99
HNF4AP41235 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.65□□□□□ -1.99
HNF4AP41235 AP000705.1-201ENST00000454567 350 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AL139109.1-201ENST00000455491 297 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.65□□□□□ -1.99
HNF4AP41235 AC133134.1-201ENST00000466800 359 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.65□□□□□ -1.99
HNF4AP41235 Y_RNA.689-201ENST00000516589 107 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 RNU6-1315P-201ENST00000517187 99 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AC009902.1-201ENST00000519351 183 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.65□□□□□ -1.99
HNF4AP41235 AL138976.2-201ENST00000563989 694 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 MIR548S-201ENST00000581352 82 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AC022893.3-201ENST00000607665 437 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AP001486.3-201ENST00000615334 372 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 AL354685.2-201ENST00000448218 1447 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 Z82209.1-201ENST00000422141 2135 ntBASIC2.65□□□□□ -1.99
HNF4AP41235 CASC19-280ENST00000642102 1351 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HNF4AP41235 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HNF4AP41235 AL139276.1-201ENST00000311910 1001 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 RNU6-1280P-201ENST00000365211 107 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 Y_RNA.534-201ENST00000384599 112 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 MIR524-201ENST00000385242 87 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 MT-TL1-201ENST00000386347 75 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.64□□□□□ -1.99
HNF4AP41235 AC138393.2-201ENST00000414742 246 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.64□□□□□ -1.99
HNF4AP41235 SNRPEP10-201ENST00000420249 274 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.64□□□□□ -1.99
HNF4AP41235 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.64□□□□□ -1.99
HNF4AP41235 AL139413.1-201ENST00000421309 217 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.64□□□□□ -1.99
HNF4AP41235 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.64□□□□□ -1.99
HNF4AP41235 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.64□□□□□ -1.99
HNF4AP41235 MTND1P18-201ENST00000448191 573 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.64□□□□□ -1.99
HNF4AP41235 AC104806.1-201ENST00000508720 308 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 RNA5SP367-201ENST00000516557 118 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 SNORA31.15-201ENST00000516771 132 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 RNA5SP503-201ENST00000517047 117 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 AC025755.1-201ENST00000521306 278 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 AP005902.1-201ENST00000521358 186 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 AC118273.2-201ENST00000532092 465 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.64□□□□□ -1.99
HNF4AP41235 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.64□□□□□ -1.99
HNF4AP41235 LINC00933-203ENST00000559812 219 ntBASIC2.64□□□□□ -1.99
HNF4AP41235 MIR4703-201ENST00000577728 79 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms