Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AL161629.2-201ENST00000615347 275 ntBASIC3.23□□□□□ -1.89
CIITAP33076 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.23□□□□□ -1.89
CIITAP33076 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.23□□□□□ -1.89
CIITAP33076 MIR1302-1-201ENST00000637932 143 ntBASIC3.23□□□□□ -1.89
CIITAP33076 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CIITAP33076 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.23□□□□□ -1.89
CIITAP33076 FAM35CP-201ENST00000554755 2470 ntBASIC3.22□□□□□ -1.89
CIITAP33076 RNU4-14P-201ENST00000410858 122 ntBASIC3.22□□□□□ -1.89
CIITAP33076 CYCSP33-201ENST00000414485 327 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.22□□□□□ -1.89
CIITAP33076 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.22□□□□□ -1.89
CIITAP33076 COTL1P1-201ENST00000422309 375 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.22□□□□□ -1.89
CIITAP33076 AC092047.1-201ENST00000424997 240 ntBASIC3.22□□□□□ -1.89
CIITAP33076 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.22□□□□□ -1.89
CIITAP33076 RPS3AP52-201ENST00000435639 297 ntBASIC3.22□□□□□ -1.89
CIITAP33076 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.22□□□□□ -1.89
CIITAP33076 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.22□□□□□ -1.89
CIITAP33076 TRBV1-201ENST00000476502 284 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AL135752.1-201ENST00000479477 471 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AL160314.1-201ENST00000490836 438 ntBASIC3.22□□□□□ -1.89
CIITAP33076 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.22□□□□□ -1.89
CIITAP33076 SNORA19.2-201ENST00000516013 114 ntBASIC3.22□□□□□ -1.89
CIITAP33076 RNU6-256P-201ENST00000516747 97 ntBASIC3.22□□□□□ -1.89
CIITAP33076 RNU6-1315P-201ENST00000517187 99 ntBASIC3.22□□□□□ -1.89
CIITAP33076 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.22□□□□□ -1.89
CIITAP33076 AP000763.2-201ENST00000540641 163 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AC106782.4-201ENST00000568264 210 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.22□□□□□ -1.89
CIITAP33076 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.22□□□□□ -1.89
CIITAP33076 NUTF2P8-201ENST00000604593 363 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AL022345.1-201ENST00000607292 135 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AC107294.1-201ENST00000609524 467 ntBASIC3.22□□□□□ -1.89
CIITAP33076 U2.17-201ENST00000611454 95 ntBASIC3.22□□□□□ -1.89
CIITAP33076 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.22□□□□□ -1.89
CIITAP33076 uc_338.15-201ENST00000615470 191 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.22□□□□□ -1.89
CIITAP33076 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.22□□□□□ -1.89
CIITAP33076 AL512643.1-201ENST00000635735 524 ntBASIC3.22□□□□□ -1.89
CIITAP33076 AC099654.10-201ENST00000640395 161 ntBASIC3.22□□□□□ -1.89
CIITAP33076 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.22□□□□□ -1.89
CIITAP33076 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
CIITAP33076 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
CIITAP33076 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CIITAP33076 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CIITAP33076 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CIITAP33076 Y_RNA.135-201ENST00000363439 95 ntBASIC3.21□□□□□ -1.9
CIITAP33076 DYNLT3P1-201ENST00000378574 347 ntBASIC3.21□□□□□ -1.9
CIITAP33076 RNU6-198P-201ENST00000384258 104 ntBASIC3.21□□□□□ -1.9
CIITAP33076 MIR512-1-201ENST00000384913 84 ntBASIC3.21□□□□□ -1.9
CIITAP33076 MIR548K-201ENST00000408406 116 ntBASIC3.21□□□□□ -1.9
CIITAP33076 VN1R36P-201ENST00000414936 291 ntBASIC3.21□□□□□ -1.9
CIITAP33076 MYL8P-204ENST00000431574 518 ntBASIC3.21□□□□□ -1.9
CIITAP33076 RPS29P6-201ENST00000438196 145 ntBASIC3.21□□□□□ -1.9
CIITAP33076 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.21□□□□□ -1.9
CIITAP33076 KC877373.1-201ENST00000479066 408 ntBASIC3.21□□□□□ -1.9
CIITAP33076 TRBVA-201ENST00000498804 316 ntBASIC3.21□□□□□ -1.9
CIITAP33076 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.21□□□□□ -1.9
CIITAP33076 Y_RNA.682-201ENST00000516457 100 ntBASIC3.21□□□□□ -1.9
CIITAP33076 RNA5SP367-201ENST00000516557 118 ntBASIC3.21□□□□□ -1.9
CIITAP33076 SNORA31.26-201ENST00000517250 137 ntBASIC3.21□□□□□ -1.9
CIITAP33076 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CIITAP33076 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC3.21□□□□□ -1.9
CIITAP33076 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.21□□□□□ -1.9
CIITAP33076 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.21□□□□□ -1.9
CIITAP33076 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.21□□□□□ -1.9
CIITAP33076 MIR1273C-201ENST00000578669 77 ntBASIC3.21□□□□□ -1.9
CIITAP33076 AC023043.2-201ENST00000589678 1026 ntBASIC3.21□□□□□ -1.9
CIITAP33076 AL138726.1-201ENST00000614873 333 ntBASIC3.21□□□□□ -1.9
CIITAP33076 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CIITAP33076 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CIITAP33076 AC008264.2-201ENST00000610193 3731 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AC009487.2-201ENST00000420969 6821 ntBASIC3.2□□□□□ -1.9
CIITAP33076 Y_RNA.67-201ENST00000362870 100 ntBASIC3.2□□□□□ -1.9
CIITAP33076 RNU1-105P-201ENST00000363470 161 ntBASIC3.2□□□□□ -1.9
CIITAP33076 Y_RNA.212-201ENST00000364177 102 ntBASIC3.2□□□□□ -1.9
CIITAP33076 Y_RNA.394-201ENST00000383942 103 ntBASIC3.2□□□□□ -1.9
CIITAP33076 MIR325-201ENST00000385260 98 ntBASIC3.2□□□□□ -1.9
CIITAP33076 MIR450B-201ENST00000401182 78 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AL353621.1-201ENST00000418219 243 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.2□□□□□ -1.9
CIITAP33076 RPL32P28-201ENST00000443577 397 ntBASIC3.2□□□□□ -1.9
CIITAP33076 CECR9-201ENST00000453421 199 ntBASIC3.2□□□□□ -1.9
CIITAP33076 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.2□□□□□ -1.9
CIITAP33076 AP004217.1-201ENST00000480579 346 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AC096576.1-201ENST00000489014 359 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.2□□□□□ -1.9
CIITAP33076 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.2□□□□□ -1.9
CIITAP33076 RNU1-86P-201ENST00000516108 154 ntBASIC3.2□□□□□ -1.9
CIITAP33076 RNU1-107P-201ENST00000516617 154 ntBASIC3.2□□□□□ -1.9
CIITAP33076 RNU6-1153P-201ENST00000516760 105 ntBASIC3.2□□□□□ -1.9
CIITAP33076 RNU6-566P-201ENST00000516790 107 ntBASIC3.2□□□□□ -1.9
CIITAP33076 RNU6-273P-201ENST00000516937 96 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AC009902.1-201ENST00000519351 183 ntBASIC3.2□□□□□ -1.9
CIITAP33076 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.2□□□□□ -1.9
CIITAP33076 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.2□□□□□ -1.9
CIITAP33076 AC005668.1-201ENST00000571142 476 ntBASIC3.2□□□□□ -1.9
CIITAP33076 LRRC37A5P-203ENST00000580181 585 ntBASIC3.2□□□□□ -1.9
CIITAP33076 MIR548AC-201ENST00000585049 88 ntBASIC3.2□□□□□ -1.9
CIITAP33076 AC044792.1-201ENST00000593294 196 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 173.9 ms