Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD3P31249 MCFD2P1-201ENST00000417812 300 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 MRPS18CP6-201ENST00000423587 223 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 TOMM20P4-201ENST00000427861 435 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD3P31249 AC006445.2-201ENST00000510061 472 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 RNU6-1046P-201ENST00000516538 107 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 RNU6-711P-201ENST00000517255 106 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 RNU6-988P-201ENST00000519081 107 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 CBX3P8-201ENST00000532412 525 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXD3P31249 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXD3P31249 AC020895.1-201ENST00000595362 272 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 AL162730.1-201ENST00000605734 292 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 AL355802.3-201ENST00000607571 545 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXD3P31249 AC006157.1-201ENST00000611750 366 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 MIR486-1-201ENST00000612171 68 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXD3P31249 AC002076.2-201ENST00000617362 122 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 AC006111.3-201ENST00000622137 383 ntBASIC2.8□□□□□ -1.96
HOXD3P31249 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXD3P31249 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD3P31249 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HOXD3P31249 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC2.8□□□□□ -1.96
HOXD3P31249 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.79□□□□□ -1.96
HOXD3P31249 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
HOXD3P31249 AC090740.1-201ENST00000623193 2262 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
HOXD3P31249 Y_RNA.80-201ENST00000362996 102 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 U8.8-201ENST00000365399 135 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 Y_RNA.422-201ENST00000384054 114 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 Y_RNA.485-201ENST00000384395 102 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 RNY1P14-201ENST00000384426 108 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 RNU6-1035P-201ENST00000384477 107 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 MIR521-1-201ENST00000384902 87 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 RNU1-101P-201ENST00000391171 127 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXD3P31249 RNU6-1077P-201ENST00000410506 102 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXD3P31249 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD3P31249 AL353997.1-201ENST00000432936 108 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD3P31249 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD3P31249 CYCSP32-201ENST00000440548 321 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 HMGB3P8-201ENST00000449709 577 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXD3P31249 SNORD105B-201ENST00000458770 79 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 AC068781.1-201ENST00000488231 618 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXD3P31249 AC022447.4-201ENST00000504053 364 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 AK3P2-201ENST00000507976 429 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC2.79□□□□□ -1.96
HOXD3P31249 RNU6-377P-201ENST00000515965 102 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 SNORD59.2-201ENST00000516873 68 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 IGHV3-76-201ENST00000522465 295 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 AP000889.1-201ENST00000530968 660 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 LINC00933-203ENST00000559812 219 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 MIR4273-201ENST00000582824 84 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 AC083806.3-201ENST00000614016 455 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 CDC27P3-201ENST00000635418 1910 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 CEP170P1-201ENST00000502249 4587 ntBASIC2.79□□□□□ -1.96
HOXD3P31249 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXD3P31249 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC2.78□□□□□ -1.96
HOXD3P31249 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.78□□□□□ -1.96
HOXD3P31249 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
HOXD3P31249 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
HOXD3P31249 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HOXD3P31249 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HOXD3P31249 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXD3P31249 CUL1P1-201ENST00000509510 2425 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
HOXD3P31249 SNORD9-201ENST00000362566 104 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 RNU6-490P-201ENST00000362985 107 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 Y_RNA.252-201ENST00000364556 101 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 RNA5SP267-201ENST00000364893 126 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 RNU5E-7P-201ENST00000365290 117 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 RNU6-639P-201ENST00000384074 107 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 RNU6-933P-201ENST00000384424 107 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXD3P31249 AC008267.5-201ENST00000424928 265 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 MTND3P9-201ENST00000429526 346 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD3P31249 NDUFB1P1-201ENST00000435191 180 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD3P31249 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HOXD3P31249 GSTA11P-201ENST00000452866 669 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 MTATP6P7-201ENST00000453315 681 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 AC013470.1-201ENST00000453438 462 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 snoU13.28-201ENST00000459235 104 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXD3P31249 RPL32P34-201ENST00000486380 400 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 BTF3L4P4-201ENST00000506381 449 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXD3P31249 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD3P31249 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD3P31249 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD3P31249 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXD3P31249 AMZ2P1-203ENST00000565833 850 ntBASIC2.78□□□□□ -1.96
HOXD3P31249 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms