Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MTND1P18-201ENST00000448191 573 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC1P18827 MED28P2-201ENST00000475771 317 ntBASIC2.12□□□□□ -2.07
SDC1P18827 RPL7P43-201ENST00000478876 753 ntBASIC2.12□□□□□ -2.07
SDC1P18827 HMGB1P30-201ENST00000492455 606 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC108078.1-201ENST00000508073 725 ntBASIC2.12□□□□□ -2.07
SDC1P18827 MIR892C-201ENST00000516410 77 ntBASIC2.12□□□□□ -2.07
SDC1P18827 RNU6-1178P-201ENST00000516674 107 ntBASIC2.12□□□□□ -2.07
SDC1P18827 IGLV3-17-201ENST00000519099 244 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AP005435.4-201ENST00000529514 284 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.12□□□□□ -2.07
SDC1P18827 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.12□□□□□ -2.07
SDC1P18827 AC010186.2-204ENST00000537668 439 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC009063.1-201ENST00000563342 702 ntBASIC2.12□□□□□ -2.07
SDC1P18827 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC1P18827 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.12□□□□□ -2.07
SDC1P18827 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SDC1P18827 AC008752.3-201ENST00000588113 712 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC087683.1-201ENST00000591187 441 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC008536.2-201ENST00000607284 349 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.12□□□□□ -2.07
SDC1P18827 AC009090.3-201ENST00000616553 565 ntBASIC2.12□□□□□ -2.07
SDC1P18827 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SDC1P18827 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.12□□□□□ -2.07
SDC1P18827 AC243829.7-201ENST00000633081 225 ntBASIC2.12□□□□□ -2.07
SDC1P18827 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
SDC1P18827 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SDC1P18827 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SDC1P18827 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SDC1P18827 RNU6-858P-201ENST00000362436 107 ntBASIC2.11□□□□□ -2.07
SDC1P18827 Y_RNA.296-201ENST00000364930 108 ntBASIC2.11□□□□□ -2.07
SDC1P18827 RNU6-45P-201ENST00000384471 107 ntBASIC2.11□□□□□ -2.07
SDC1P18827 NDUFB4P4-201ENST00000404822 243 ntBASIC2.11□□□□□ -2.07
SDC1P18827 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.11□□□□□ -2.07
SDC1P18827 RNU6-607P-201ENST00000411283 108 ntBASIC2.11□□□□□ -2.07
SDC1P18827 AC007064.1-201ENST00000412238 351 ntBASIC2.11□□□□□ -2.07
SDC1P18827 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.11□□□□□ -2.07
SDC1P18827 CYCSP33-201ENST00000414485 327 ntBASIC2.11□□□□□ -2.07
SDC1P18827 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.11□□□□□ -2.07
SDC1P18827 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.11□□□□□ -2.07
SDC1P18827 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.11□□□□□ -2.07
SDC1P18827 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.11□□□□□ -2.07
SDC1P18827 AL441985.1-201ENST00000457727 251 ntBASIC2.11□□□□□ -2.07
SDC1P18827 AC079382.1-201ENST00000493346 557 ntBASIC2.11□□□□□ -2.07
SDC1P18827 HMGB1P29-201ENST00000505659 499 ntBASIC2.11□□□□□ -2.07
SDC1P18827 AC114781.4-201ENST00000513707 639 ntBASIC2.11□□□□□ -2.07
SDC1P18827 SMURF2P1-201ENST00000514992 481 ntBASIC2.11□□□□□ -2.07
SDC1P18827 RNA5SP112-201ENST00000515937 99 ntBASIC2.11□□□□□ -2.07
SDC1P18827 RNA5SP281-201ENST00000516504 135 ntBASIC2.11□□□□□ -2.07
SDC1P18827 RNU6-405P-201ENST00000516637 110 ntBASIC2.11□□□□□ -2.07
SDC1P18827 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SDC1P18827 AP004607.1-201ENST00000524456 203 ntBASIC2.11□□□□□ -2.07
SDC1P18827 FAM92A1P1-201ENST00000528023 890 ntBASIC2.11□□□□□ -2.07
SDC1P18827 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.11□□□□□ -2.07
SDC1P18827 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SDC1P18827 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.11□□□□□ -2.07
SDC1P18827 LRRC37A5P-203ENST00000580181 585 ntBASIC2.11□□□□□ -2.07
SDC1P18827 MIR3162-201ENST00000581818 82 ntBASIC2.11□□□□□ -2.07
SDC1P18827 AC080013.6-201ENST00000606185 215 ntBASIC2.11□□□□□ -2.07
SDC1P18827 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.11□□□□□ -2.07
SDC1P18827 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.11□□□□□ -2.07
SDC1P18827 AC080100.1-201ENST00000624239 5356 ntBASIC2.11□□□□□ -2.07
SDC1P18827 AL136360.1-201ENST00000503377 1900 ntBASIC2.11□□□□□ -2.07
SDC1P18827 Z82209.1-201ENST00000422141 2135 ntBASIC2.11□□□□□ -2.07
SDC1P18827 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SDC1P18827 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.1□□□□□ -2.07
SDC1P18827 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SDC1P18827 RNA5SP289-201ENST00000362332 137 ntBASIC2.1□□□□□ -2.07
SDC1P18827 RNU6-486P-201ENST00000363116 107 ntBASIC2.1□□□□□ -2.07
SDC1P18827 RNU6-1303P-201ENST00000364841 107 ntBASIC2.1□□□□□ -2.07
SDC1P18827 RNU5A-6P-201ENST00000384136 116 ntBASIC2.1□□□□□ -2.07
SDC1P18827 SNORA67.4-201ENST00000384688 142 ntBASIC2.1□□□□□ -2.07
SDC1P18827 MIR221-201ENST00000385135 110 ntBASIC2.1□□□□□ -2.07
SDC1P18827 RNU2-66P-201ENST00000410650 161 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AL353193.1-201ENST00000421444 268 ntBASIC2.1□□□□□ -2.07
SDC1P18827 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.1□□□□□ -2.07
SDC1P18827 BX276092.3-201ENST00000424182 230 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AC002486.1-201ENST00000435098 391 ntBASIC2.1□□□□□ -2.07
SDC1P18827 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.1□□□□□ -2.07
SDC1P18827 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.1□□□□□ -2.07
SDC1P18827 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.1□□□□□ -2.07
SDC1P18827 AL356010.1-201ENST00000456364 102 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AC112771.1-201ENST00000463581 102 ntBASIC2.1□□□□□ -2.07
SDC1P18827 RPL36AP48-201ENST00000485521 314 ntBASIC2.1□□□□□ -2.07
SDC1P18827 MTAPP1-201ENST00000489154 819 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.1□□□□□ -2.07
SDC1P18827 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
SDC1P18827 AC010493.1-201ENST00000513479 292 ntBASIC2.1□□□□□ -2.07
SDC1P18827 RNU5B-3P-201ENST00000516601 115 ntBASIC2.1□□□□□ -2.07
SDC1P18827 RN7SKP219-201ENST00000516825 296 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.1□□□□□ -2.07
SDC1P18827 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.1□□□□□ -2.07
SDC1P18827 AC023824.2-201ENST00000566185 400 ntBASIC2.1□□□□□ -2.07
SDC1P18827 MTATP6P3-201ENST00000581686 676 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AC105245.1-201ENST00000581934 244 ntBASIC2.1□□□□□ -2.07
SDC1P18827 MIR4658-201ENST00000584344 65 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AC091805.2-201ENST00000603848 235 ntBASIC2.1□□□□□ -2.07
SDC1P18827 AP001596.2-201ENST00000608410 312 ntBASIC2.1□□□□□ -2.07
SDC1P18827 HMGB1P24-202ENST00000615653 685 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms