Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC0.17□□□□□ -2.38
COL6A3P12111 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC0.17□□□□□ -2.38
COL6A3P12111 MIR377-201ENST00000362145 69 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 Y_RNA.67-201ENST00000362870 100 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.17□□□□□ -2.38
COL6A3P12111 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
COL6A3P12111 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC0.17□□□□□ -2.38
COL6A3P12111 snoU13.9-201ENST00000458927 103 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 PSMC1P5-201ENST00000512850 177 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 AC025588.2-201ENST00000604851 466 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 AL021879.1-201ENST00000611756 288 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 MIR29B2-201ENST00000385055 81 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
COL6A3P12111 RNU2-63P-201ENST00000410792 194 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 RPL36AP53-201ENST00000432891 316 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC0.17□□□□□ -2.38
COL6A3P12111 PNPLA4P1-201ENST00000458328 305 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC0.17□□□□□ -2.38
COL6A3P12111 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.17□□□□□ -2.38
COL6A3P12111 AP003122.4-201ENST00000530980 758 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 MTCYBP27-201ENST00000555160 670 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC0.17□□□□□ -2.38
COL6A3P12111 AC012435.1-202ENST00000568772 240 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 MIR3165-201ENST00000579874 75 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 AL138963.2-201ENST00000605137 226 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 AC092192.1-201ENST00000633154 1018 ntBASIC0.17□□□□□ -2.38
COL6A3P12111 Y_RNA.225-201ENST00000364326 97 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 RNA5SP125-201ENST00000364843 120 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 Y_RNA.439-201ENST00000384119 94 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.16□□□□□ -2.38
COL6A3P12111 MTCO3P12-201ENST00000416718 547 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.16□□□□□ -2.38
COL6A3P12111 ARPC3P5-201ENST00000448802 534 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 UBE2Q2P9-201ENST00000490086 202 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC099513.1-201ENST00000490423 301 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 MTCYBP16-201ENST00000509187 1129 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 RNA5SP437-201ENST00000517249 129 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC0.16□□□□□ -2.38
COL6A3P12111 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC0.16□□□□□ -2.38
COL6A3P12111 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC0.16□□□□□ -2.38
COL6A3P12111 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC0.16□□□□□ -2.38
COL6A3P12111 AC087481.2-201ENST00000565492 330 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 TMF1P1-201ENST00000576058 373 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AP001330.4-201ENST00000604350 154 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 MIR8065-201ENST00000620577 100 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AL512506.2-201ENST00000624472 458 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.16□□□□□ -2.38
COL6A3P12111 Y_RNA.121-201ENST00000363309 113 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 Y_RNA.442-201ENST00000384131 102 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AL589655.1-201ENST00000405398 482 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC009310.1-201ENST00000414414 451 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.16□□□□□ -2.38
COL6A3P12111 EIF4EP2-201ENST00000422816 654 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 MICF-203ENST00000432679 129 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.16□□□□□ -2.38
COL6A3P12111 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC0.16□□□□□ -2.38
COL6A3P12111 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.16□□□□□ -2.38
COL6A3P12111 AC114982.1-201ENST00000469402 321 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 OR52A4P-202ENST00000481634 799 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC010469.2-201ENST00000496412 480 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC0.16□□□□□ -2.38
COL6A3P12111 RNA5SP165-201ENST00000517142 115 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.16□□□□□ -2.38
COL6A3P12111 OR8K4P-201ENST00000534608 872 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.16□□□□□ -2.38
COL6A3P12111 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.16□□□□□ -2.38
COL6A3P12111 MIR3126-201ENST00000577443 74 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC0.16□□□□□ -2.38
COL6A3P12111 AL132822.1-201ENST00000617063 513 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
COL6A3P12111 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.16□□□□□ -2.38
COL6A3P12111 RNU6-1222P-201ENST00000384615 107 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 MIR30A-201ENST00000385092 71 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC013410.2-201ENST00000422627 201 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 GAPDHP17-201ENST00000449858 1001 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AL133373.1-201ENST00000497098 94 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.16□□□□□ -2.38
COL6A3P12111 AC011260.1-201ENST00000578420 472 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AL713866.2-201ENST00000603579 219 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC055876.5-201ENST00000605667 259 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 AC091925.2-201ENST00000625059 256 ntBASIC0.16□□□□□ -2.38
COL6A3P12111 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
COL6A3P12111 RNU1-124P-201ENST00000363861 145 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 MIR561-201ENST00000385216 97 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AGR3-202ENST00000402239 563 ntTSL 2 BASIC0.15□□□□□ -2.39
COL6A3P12111 RPS24P7-201ENST00000416921 246 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.15□□□□□ -2.39
COL6A3P12111 AC092047.1-201ENST00000424997 240 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 RPS15AP10-201ENST00000432472 382 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC0.15□□□□□ -2.39
COL6A3P12111 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC0.15□□□□□ -2.39
COL6A3P12111 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.15□□□□□ -2.39
COL6A3P12111 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC0.15□□□□□ -2.39
COL6A3P12111 MTND1P16-201ENST00000465177 898 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 RNU6-319P-201ENST00000516025 108 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 MIR3129-201ENST00000581095 76 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 MIR4422-201ENST00000581938 83 ntBASIC0.15□□□□□ -2.39
COL6A3P12111 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms