Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXD4P09016 AC099548.1-201ENST00000421443 426 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 MTCO3P18-201ENST00000440206 761 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXD4P09016 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.43□□□□□ -2.02
HOXD4P09016 MTND3P16-201ENST00000452205 344 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 RPL37P6-201ENST00000460682 294 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 AC128713.1-201ENST00000471495 306 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 AL160314.1-201ENST00000490836 438 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 YWHAEP4-201ENST00000505390 198 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 CCDC34P1-201ENST00000507441 517 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 AC074344.1-201ENST00000512823 224 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 RNA5SP290-201ENST00000517133 127 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.43□□□□□ -2.02
HOXD4P09016 AC118273.2-201ENST00000532092 465 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.43□□□□□ -2.02
HOXD4P09016 MIR548S-201ENST00000581352 82 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 AL138889.2-201ENST00000603883 242 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 uc_338.34-201ENST00000617467 174 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.43□□□□□ -2.02
HOXD4P09016 Z99571.1-201ENST00000636677 394 ntBASIC2.43□□□□□ -2.02
HOXD4P09016 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
HOXD4P09016 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.43□□□□□ -2.02
HOXD4P09016 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
HOXD4P09016 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
HOXD4P09016 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXD4P09016 MTND4P14-201ENST00000435799 1354 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.42□□□□□ -2.02
HOXD4P09016 Y_RNA.231-201ENST00000364358 102 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 Y_RNA.245-201ENST00000364493 95 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 RNU4-66P-201ENST00000365199 138 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 SNORA4.3-201ENST00000365564 137 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 RNU6-38P-201ENST00000384085 107 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 SNORA70B-201ENST00000384210 135 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 RNU6-1127P-201ENST00000384580 107 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
HOXD4P09016 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD4P09016 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.42□□□□□ -2.02
HOXD4P09016 AL513124.1-201ENST00000450410 614 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD4P09016 FABP5P15-201ENST00000453566 214 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 RNU6-333P-201ENST00000459117 107 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.42□□□□□ -2.02
HOXD4P09016 RPS27P27-201ENST00000498779 255 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 AC009901.1-201ENST00000506703 541 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD4P09016 AF235103.2-201ENST00000525753 346 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 AL137161.1-201ENST00000532231 390 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXD4P09016 AL118558.2-201ENST00000556294 238 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD4P09016 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD4P09016 AC010620.2-201ENST00000600135 313 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 BNIP3P9-201ENST00000603714 553 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD4P09016 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.42□□□□□ -2.02
HOXD4P09016 AC011890.2-201ENST00000613393 294 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 MIR6817-201ENST00000615588 66 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 AC006504.8-201ENST00000621046 635 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXD4P09016 AL512643.1-201ENST00000635735 524 ntBASIC2.42□□□□□ -2.02
HOXD4P09016 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
HOXD4P09016 Z82195.2-201ENST00000612348 18351 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
HOXD4P09016 Y_RNA.86-201ENST00000363020 111 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 MT-TL1-201ENST00000386347 75 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 RNA5SP354-201ENST00000391247 136 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 RNA5SP118-201ENST00000410385 109 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXD4P09016 ZNF863P-201ENST00000426746 417 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 SRIP2-201ENST00000428470 166 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 RPS15AP27-201ENST00000449183 343 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXD4P09016 CECR9-201ENST00000453421 199 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 SCARNA18-201ENST00000459004 134 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 HMGN2P26-201ENST00000463169 339 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 RPL21P99-201ENST00000480369 423 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.41□□□□□ -2.02
HOXD4P09016 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXD4P09016 AC018710.1-201ENST00000506509 158 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXD4P09016 RNA5SP282-201ENST00000516355 108 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 RNU6-1038P-201ENST00000516516 104 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 RNA5SP82-201ENST00000516707 92 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXD4P09016 MTND4P7-201ENST00000523876 130 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 AC078814.3-201ENST00000553036 491 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.41□□□□□ -2.02
HOXD4P09016 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXD4P09016 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.41□□□□□ -2.02
HOXD4P09016 AC008739.2-201ENST00000597006 317 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 RNU6-89P-201ENST00000606519 100 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXD4P09016 AC002064.3-201ENST00000623448 346 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 AC009033.1-201ENST00000624279 431 ntBASIC2.41□□□□□ -2.02
HOXD4P09016 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXD4P09016 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms