Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SNORA24.1-201ENST00000384401 135 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 Y_RNA.508-201ENST00000384502 114 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 MIR558-201ENST00000384920 94 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 MIR1289-2-201ENST00000408360 111 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.91□□□□□ -2.1
CLDN9O95484 MED13P1-201ENST00000428342 171 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AL445646.1-201ENST00000431784 216 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.91□□□□□ -2.1
CLDN9O95484 CALM1P1-201ENST00000442082 433 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 PSPHP1-201ENST00000450062 261 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.91□□□□□ -2.1
CLDN9O95484 RNU6-1129P-201ENST00000515964 104 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 RNU2-19P-201ENST00000517288 84 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AC022878.1-201ENST00000530684 149 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.91□□□□□ -2.1
CLDN9O95484 AC009094.1-201ENST00000564443 426 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.91□□□□□ -2.1
CLDN9O95484 AC093249.1-201ENST00000567049 203 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AL031274.2-201ENST00000599419 203 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AL138889.2-201ENST00000603883 242 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 APOOP1-201ENST00000604695 592 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.91□□□□□ -2.1
CLDN9O95484 AL157786.1-207ENST00000627771 695 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 AC241585.2-209ENST00000638217 143 ntBASIC1.91□□□□□ -2.1
CLDN9O95484 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.91□□□□□ -2.1
CLDN9O95484 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
CLDN9O95484 RNU6-843P-201ENST00000384454 104 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 MIR578-201ENST00000384828 96 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 MIR186-201ENST00000384988 86 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 MIR561-201ENST00000385216 97 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 RPL23AP32-201ENST00000395315 459 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 RPS3AP36-201ENST00000398190 775 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 AL079342.1-201ENST00000401460 267 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 RNA5SP111-201ENST00000411386 101 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN9O95484 GPM6BP3-201ENST00000442797 145 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.9□□□□□ -2.11
CLDN9O95484 NDUFB1P2-201ENST00000449477 176 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 AC005178.1-201ENST00000508392 440 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 AC108729.3-201ENST00000513484 108 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.9□□□□□ -2.11
CLDN9O95484 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.9□□□□□ -2.11
CLDN9O95484 RNU2-53P-201ENST00000516257 147 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN9O95484 AC107953.1-201ENST00000522216 297 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.9□□□□□ -2.11
CLDN9O95484 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.9□□□□□ -2.11
CLDN9O95484 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.9□□□□□ -2.11
CLDN9O95484 RPL21P5-201ENST00000554662 472 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 MIR4529-201ENST00000578110 78 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.9□□□□□ -2.11
CLDN9O95484 AL022161.1-201ENST00000604390 213 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
CLDN9O95484 AL359851.1-201ENST00000569460 4997 ntBASIC1.9□□□□□ -2.11
CLDN9O95484 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
CLDN9O95484 RNU6-1010P-201ENST00000362757 107 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 RNY1P12-201ENST00000364251 105 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 SNORD116-20-201ENST00000384529 92 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 Y_RNA.560-201ENST00000384689 102 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 MIR17-201ENST00000385012 84 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 MORN2-203ENST00000409131 544 ntTSL 5 BASIC1.89□□□□□ -2.11
CLDN9O95484 RNU4-26P-201ENST00000410270 107 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AL031779.1-201ENST00000415663 330 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.89□□□□□ -2.11
CLDN9O95484 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.89□□□□□ -2.11
CLDN9O95484 ZNF736P8Y-201ENST00000451913 669 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.89□□□□□ -2.11
CLDN9O95484 RBBP4P6-201ENST00000508098 202 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 Y_RNA.687-201ENST00000516558 91 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 RN7SKP219-201ENST00000516825 296 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 RNU6-1220P-201ENST00000517126 108 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 RNU6-586P-201ENST00000517265 104 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AC022616.3-201ENST00000523940 148 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 RANP3-201ENST00000530970 276 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 MTND1P24-201ENST00000552175 861 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AC233702.2-202ENST00000562547 291 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.89□□□□□ -2.11
CLDN9O95484 MIR3935-201ENST00000583472 104 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AC090616.2-202ENST00000584248 222 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CLDN9O95484 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.89□□□□□ -2.11
CLDN9O95484 AL451064.1-201ENST00000607718 471 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AP001486.3-201ENST00000615334 372 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AC090517.3-201ENST00000625170 141 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 SCARNA4-202ENST00000625402 129 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 AC019226.2-201ENST00000625973 424 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CLDN9O95484 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.89□□□□□ -2.11
CLDN9O95484 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
CLDN9O95484 CENPCP1-201ENST00000533085 2578 ntBASIC1.88□□□□□ -2.11
CLDN9O95484 Y_RNA.22-201ENST00000362492 102 ntBASIC1.88□□□□□ -2.11
CLDN9O95484 PGBD4P6-201ENST00000421501 610 ntBASIC1.88□□□□□ -2.11
CLDN9O95484 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.88□□□□□ -2.11
CLDN9O95484 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.88□□□□□ -2.11
CLDN9O95484 HMGN2P3-201ENST00000433603 273 ntBASIC1.88□□□□□ -2.11
CLDN9O95484 HMGN2P5-201ENST00000436882 273 ntBASIC1.88□□□□□ -2.11
CLDN9O95484 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.88□□□□□ -2.11
CLDN9O95484 TAF9P1-201ENST00000445421 515 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms